HsaINT0159834 @ hg19
Intron Retention
Gene
ENSG00000073849 | ST6GAL1
Description
ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 [Source:HGNC Symbol;Acc:10860]
Coordinates
chr3:186760442-186769134:+
Coord C1 exon
chr3:186760442-186761098
Coord A exon
chr3:186761099-186769036
Coord C2 exon
chr3:186769037-186769134
Length
7938 bp
Sequences
Splice sites
5' ss Seq
TCGGTATGT
5' ss Score
9.22
3' ss Seq
TGTTTCTTTGTGGTTTATAGATG
3' ss Score
8.88
Exon sequences
Seq C1 exon
GCTTGTTTTCCTGCTCAGAACAAAGTGACTTCCCTGAACACATCTTCATTATGATTCACACCAACCTGAAGAAAAAGTTCAGCTGCTGCGTCCTGGTCTTTCTTCTGTTTGCAGTCATCTGTGTGTGGAAGGAAAAGAAGAAAGGGAGTTACTATGATTCCTTTAAATTGCAAACCAAGGAATTCCAGGTGTTAAAGAGTCTGGGGAAATTGGCCATGGGGTCTGATTCCCAGTCTGTATCCTCAAGCAGCACCCAGGACCCCCACAGGGGCCGCCAGACCCTCGGCAGTCTCAGAGGCCTAGCCAAGGCCAAACCAGAGGCCTCCTTCCAGGTGTGGAACAAGGACAGCTCTTCCAAAAACCTTATCCCTAGGCTGCAAAAGATCTGGAAGAATTACCTAAGCATGAACAAGTACAAAGTGTCCTACAAGGGGCCAGGACCAGGCATCAAGTTCAGTGCAGAGGCCCTGCGCTGCCACCTCCGGGACCATGTGAATGTATCCATGGTAGAGGTCACAGATTTTCCCTTCAATACCTCTGAATGGGAGGGTTATCTGCCCAAGGAGAGCATTAGGACCAAGGCTGGGCCTTGGGGCAGGTGTGCTGTTGTGTCGTCAGCGGGATCTCTGAAGTCCTCCCAACTAGGCAGAGAAATCG
Seq A exon
GTATGTTCTGGGGTTGTTCTGTGAATGGCAGTGCTTATTGGGACTGGCTGGGCATATTGATGGTATGGGAGACAAGTGGCCCAAGTGTGGCTCAGCGGACCAGTGGAGTGGGCCCAGGGCAGTGTTTTTTTCAGAGTCACAAGTGACACAGAGGGAGTTGAACAGATGGCGCTCTAGGCCCCCGCATCTTTTATCAATTAGAAGAGCTTCATTATTGTTTCCTAATATTTTTAGTTGATATATAATAATTAGATATATTTATGGGGATATTTTGATACGTGTATTCAATGTGTAATGATCCAATCAGGGTAATTAGAATATCTATCACCTTGAACATTTATTGTTTCTTTGTGTTGGGAACAGAATAGTTTTATTTTCATCTGTTTTAAATATTGGAATTGTGTAGAAGATTTCATTTGAAAAAGAGAGTTCCGCTGCTACCAATAATCAAAAGCCTACAATTGACCTTTGAAAAGACTTGAAGCATAGATCTGCACATCATTTCCAGGTTCTGAAATTCTGTTGTTTTTCCTGATTAGTGGAGGACTCTATTGGCCTCAACAACCTGGGTAATTTTCAGCTTTTCTCTTTGAAAAGATTTAATTGGGTCAGTAATTCTTAACTGGGGGCTATGGACCAACTTCAGAGGGTCATGAATCCCTGCAATTGCGTGCAAAACTGTCTGTGGATTAGGTGTGTAGAATGTATGTGTATGCGTATAAGTGTGTCCGTGCATTTTTCCAGGAAGGGAGTTTGTAGACTGCAGTTTATTCTCTAAGGGATCTGTGACCCAAAAAAGTTTCAGAGTCACTGGTCACAACATATTAATTTGCTTTTCTTGAAACCCTTTGTAGTGAATCAAGATAGAAAGTCTGTCTATATTTGTAAACCTGTGTAACAGAGAGCCTTATTTCTCTTATGCTGAATGTGTTTTCCATTATTTGAAATGAATCAGCTAAAGAAAGCAAAGCACAGGAAGCTTTGCTCCTCTGTCAGCCTGGAGGTACTGGAGCAGGTGAGGTCATACGTCTCCTTTTTTATTTCCTTCATTTGACTGCCAGGAAAAATGGTCTGAAACCCAGCACAGGCTCTCAAAGAAAAGTAGGCCCAAACTGGATTCTCTAGAGCAGAAAGAAATGGTGAGATCACAGTTTCTACCTCCCCAAATAGGCAGCTGCCCCGCTGGCCGGCCCCACCTCAACTTCTGCTTTTGTATTTTTGGTTTTTCTTGGACTTTGTTTTCAAGAAACTAAATGTGATTGGTTTTTGTTCATCCATAATGGAGCTAAGTTTCTTTCTTCTCCATTTTTGCTGCTTATGTAGCAAATGTTTGGGATATCCTAGGTATTAGCTGATCCTTCTTCTTCATGTCAAGTTAATATTGCGTGCCTGGCTGAAATTGTACTGAAGTTTGAGACAGGGCCTGATAGCTCTGTTAATTAGAACTACAGCTTTAATTTTATGCACTCCTTAAAGATTTGGGGTGATTTAAGTAAACATTAATACAAATAATATTTTTCTATAGATTGCAGTTTCAACTTCAAAATAAGGATTTCCACAGAAGGACTTTGATCCTGAGATGTAATCAAAATTGCATGTTAGACTTCGAATGTTCTGCTGTTATGGGGTATATATCCTCTTGGCATTTTGTCTAACAAATATTTTAAGACATTCATATATTCTTTTATTTATTCATGGATTCATCAACAATACAAAGGGGAAAGGGAAGGGAAAGGCCCTTTGTTGAAGCCCGAGTTGCAGGCAGCGTGCCAGGCCCATACACTTCCTCCTGCATCTGGAATTTGTTGAGTCTCTTCCCAACTACTGGATGGATCAGATTATTTCAAATGGTTTTCTTTTACAAATAACATTGCTGACAAGGTTTTTGTGCAGATAACTTAGGTAACCACTATTGACATTCAACAGGGAAATATCCTCAGAAGTGAGGCTAGAAGACACGAGTAAGAGACATTTTATGACTTTTTTTTTTTTGTCCATAGCAAGATTTTCTATCAGAGAGAGTGTAATAACATACTCTGCCTCCAGCAGTCTCACAAACCAGCCAATGGTGGGCTCAGTCATTTTCAATTATTTTTGATAGTTTACTCATACATGTTAAGTATCCTAGATTTGCTGGAATTTTCATGTCAAACAGTAGCATAATTTTAAAACACTATCATCAATACAAGTGATGCTTATTATGCATCTGCTGAGTTCCTAACATGCCTTGCTCTTTTCATCCTCCCAGAAGTCCTGTGAGGTTGATAAGATTATTGGTCTCATTTTGCTGGAGAGCTAAATGCGGAGGCTCAAGTGGTCACACAACTGGCTAATAGCAGACTGAGGTTTGAAAGCAGAGTGCTTGCTTCAAAGACCCCACTCTTGGCACCTCTGCTGTTGTGCCTCATAATAATTGTAGCTTCATAATAAAATTCGGTGTGATTATTCTTTTATTATGTTAAAAATTTTCTTCTATTCTTGTCTATTAGCTGTCCTAGAGAGAAAGAGAAGGGTATTCTGAGTTAAGGCAAAGGCAAGAAGCAAAGGCTGCACGGGGAAAAGTGTGTTTGGGCATCACAAATAATCCTGTTTGGACGGCATGTGGGTCCTTGTGGGTGAAGATGGGTGAGGAACGAGGCCAGAAAGGTAGCTAGGCATTAGCTCTTAGAGAACGTTGATAGTCACAATAAGGACTTTAGGTTTCATTCTTTAAGCCATGGAGAGCCCTAGGAGGTTTTTGAACAAGGGAGACTTCTCACTTCTCTATGAGTCCCTGTTTTGTACTCTATAATGTCTCCATTATTAGGGACTATTGCCACAACCAGGTCAGAAGTGCCAGGCCTGCCCAGGCTGTGGTAGCAGTGATGAAGAGAAAGGACCTTACCTGAGAGGGCTCATGAAGTAAGAGGCAGAACTTACTATCTAGCTGGAAATGATCTTGAGTGAGAGGCAGGAGCCAGGATGTCTAGCCTGGGAGCAGGCTGTATCTTACCAAGGGGAGCATGCTTCCAGAGGAACGCAGATTCCACTTTGGATGTTCTGAGACTGAAGTGTGTGTGGATTTCCCTGGGTAGATATCTATGCTGTTGAGTACTTAATTCTAGAGAAGGATCAGATATCGAGATAGATTTACAAGTCATTTGTATCAAGGTGAGATAATGGTTATAATCCAGGGAAGAAGACCAATTAGAAAATCTAGAAAAAGATTTACATTTAAAGGACAAAGAAAAGAACAGGGAAAAGTCAGAAGGGTCAGAGACCGGCTAGAGGAGAACTAGGTGTGCACCATACAATGGAAGGCAAAGGGGGATGGAGTTTGAGGGATGTTGGCTGTTGGTATCAAAGTCTGCAGAGGTGGGACATATTCTTGGGCAGAATAAGGACTGAGAAGACACCTGTGAACTGAGTAGCTTGGAGAACATGATCAGTTATATCAGGGGTCAGCAAGCTTTTCTTAAAAGGCCGGATAGTAAATAGTTTTGGCTTTGAGGGCCATGATGTCTGTCACAACTACTCAACTCTGCTGTTGTACTGCAGAAGTAACAATAGATAGTAGTAAATGAACAGGCCTGGCTATGTTCCAACAAAACTTTATTTACAAAATGAGGGATGCACCAGATTTGTCCTTCAAGTCATAGTGTTTTGTTTTGTTTTTGACGGAGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCATGATCTCGGCTCACTGCAAGCTCCGCCTCCCAGGTTCATGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGCCTGCCACCACGCCTGGCTAATTTTTTGTATTTTTAGTAGAGACAGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGATCTCATGATCCGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGCGCCCGGCCAAGTCATAGTTTTTTTTTTTTTTAACTCTGATCTATAGTATGTCTGTTTTCTTCAACCGGACTCAGAATGTAATTTTCCATAAATGGTTGTAGGATGTATTAGGCTAACTTGAAAATATAAAAGCGTTTGGTGATAAATTGTGATAAAATTTCTTTCATAATAATTTCTAGCTATTTAGAGTTAACTACACCTAGAGGCAGTGGATTTTGATGTATTTATGAATTTACTAACTTGAGCTGATTCTGTTGAATTTTCTAAGCGTGTGATTGTATAATCTGAATACAGTGATGCATTTATTTTTTCTTCTCCTAATTTGCCTCTTTTTCTGAGCTCTAATTCTAAGTTACAGAGAGGTGGTAGTTTCTTTTTTCTGCAGCCTTTCCCCCTCGCTAGGCTTGTTTGCTGGGATCTCAGTAGTTGTGGATTTCTCTTGGTGATTTCTTAGAGGCCTATTTGAGTTTGAAAGTTCAACTTTCAATTAGCAGGGAGGTTTGACAAACAGGATTTTTTTCTCTTTAAGTACCCAAGTCAGTTTAAAGTTTTCTTTTTAAAAATTTGATATATAATAATTGTACATATTTATGGGGTACATGTGATATTTTGGTACATGCATACAATGCGCAATGATCAGATTGGGTAATTAGAATATCCATCTCCTCAAAAAAGTTTTCTCCTTTGATTGGCTTTTTTCTTTTCCTTTCTTTTTTTTTTTTTTGAGACAGAGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAAGCTCCACCTCCTGGGTTCACACCATTCTCCTACCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCCTGCCACCATACTCGGCTAATTTTTTTGTATTTTTAGTAGAGACGAGGTTTCACTGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCTGCCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGTGCCCAGCCTGATTGGCTTTTTTCTTAGAATCACGTCCAAACTTCATACCTGGGCCCCCATGTCCGTGTATGATCTGGTTCCTGCCAACCTCTGTAACTGTATCTTTGATTTTTCTTCCCCTCACTCCTTGTCTACAGTCAAGTCCCTGCCCTCATTGTGGTCCTGACACTTGCTGCATCCTCTGACTGGTGGACTTCTCTGAACCCTTCCCAAGGCTGGCCATCCTTTGGGTCTCAGCTCCAAGGCATTCCCTGAATCATCACTCTATGAAGGAAATTCCCTCAGTGTCTCTGGCACACAGCTCAGCTTGTTAGTGTCACAGTGTTTGTCACAATCCGAAATTATCTTATATGTAGGTTGTTGTCCGTCTTTACTGTCTATGTCCGTGCAGTAGAATGTAATATCTCTGAGGGCATGGACCTTGTCTTTGTTGCTCACAGGCGTCGTCTCCCGTGTCTAAAACTGTGCCTGGCATAGAGTAGGTGCTCAATCAGTATTTGTTGACTGAACAAAACAATTCTCCTTTCTTATGGTCAACATCAAGCATCTGTTCTAACCTAAGCCTTCTGTGCTGGATGTTCTCCAGTGGCACCTCCAAATCCCACTCTCACCCTTTTCCATCTGGCTCTGTCCCTGAGAAATTGAATTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGAATGAGTCTTGTTCTGTTGCCCAGGCTGGAGTGCAGTGGCACAATCTCGGCTCACGCTAACCCCCGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCAGAGTAGCTAGGATTACAGGTGCGTGCCACCACGCCCAGCTAATTTTTGTATATTTAGTAGAGATGGGGTTTCACCATGTTGGTCAGGCTGATGTCGAACTCCTGACTTCAGGTGATCCACCCGCCTCGGCCTCCCAAAGTACTGGGATTACAGGCGTGAGCTACTGCGCCCAGCTGAGAAATTAAAATTTTGAACTGCGTTAATTGGCATTTCTCACTCTCTGGATTTTCTCTGGGACTGGCCAGGAGAAGCAGTGGCATTAAAGCTGAGAAGAAGACTAAGGTCAGGGCACCTATTCCGCCATGTTTCGCCTTGCAGAGTAAACTCAAGCTGTATCTTTCTCTTGACTGAAGGTCTCAGATCCTGCCAGGAGGCCGTCCCAGTCTTGGTCCTGCTCTGTCCCTTTTCCCTTCAGTTCTATGAGATCCAAGGGAAGGGGCAGAACCAGGTTGGGATATTGACTCCCTCAGGCTCCTTCTTGCCCGGAGGTTGGCAATAGCTGTGTTCCTCTCCTAAAGGCAACAGCTCCCGACAGGTGTCCCTCCTCAGCTCAGGGTCTCCGCTCATCAGGCCACAGTAGACCTGGGGTGGTAATGACACCCTGCAGTCATCAACCCTGGGGCTTTAGCCTATTCCGTGTTGATTTCTTTAAACTCTACCCCAACTTGGTAAGTAGTCCTTTTATGAATCTCTCAATTACTCCATTGGAGCTTCTCATCTCTTTTCTACTGGGATTCTCACCAATAATTTATTCATCTGTGAAATGGAAAAGTTGACTAACTGAAGTTTCTGATGGATCTGTGTTTCTCATGCAATTACTACTAATCCCTTTCGAACCAGTGACTGATTCTGACAAAATGTGTTGTAATTCTGAGTTGTGTAAAGATATACCTCCTGCCCTATGTGCACTTCAGTGTACCTGCCCTGTAAGATGATAACAGTTTGGACTGTGCCCTTCTCAGATAATTTTCAAACCATTTTGATGAAATTTTGCCCTAGGATTGAGGATAGGGTTGTGTTGTTTTCATGAATGATGTTTCTGTGTTCCTGAGGTTTAGTACATACATTGGAACTGAAATAAAGAGAGAGGCTTTCATCCTTAATTCTGTGGATATCCTCTTTCTAAATCATCTTGTGTTCAGTCAAATGCCCTCACTTCCCCAAATCCTGTGTGGATAAAGAATGATCCAAAACAAACCTGAATAGGACAATAGAGGATTCAGCTGACCCCCAGATCCCGTGTAGATTTCAGTGGTGAGCCCCAAACTTGCTTGACCGAGTAAGATTGAAAGAAGTTCTCATAGGATCACAGGATTTGGATGGCTCCTTAAAGTCTTCAGTTCCCTCCTTCATCAGATAGGTCAACGTGGGGTAGAGAAACTTTTCCAAGTCTTCCAAACACTGCTTAAACAGTTGCAAAGACAAGGAGCTAGCCCAGGAAGCTTTTAGGTTTTTCAAGATGGCCTGTTTGATTTTGACTGGATTTAGTACATTGTTTCTGACAATGGCTTACAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGGGAGGGAAGGAAGGAGGGAGGGAAGGAAGGAAGGAAAAGAAGGAAGGAAGGAAGGAAAAGAGAGAGAGGAAGGAAGTTAGTTTAGCTCTCTGACCTCCTCTTCCATTTCTGCCACACCAGTTCTGTGACTCTTCCCTGGGCCTCAGGTTCCTAAATGGAACGCCTGGGGGTTGTCTTGGATGCCATAGTTAAATCCTGTCCATTTGCTGAGCACTGCATGCTTTTCAAAGTGCAATGGGGTCCTTTGCACTTGTGGGATACACTGAACATATGGTAGTGTTTTCATTTTTCTGACAGAGATAGAAATATAATCTACTGGTGATACCAAGAGAATATCTGGTTTGCTGCTTTGATAACTGGAGTAGCTACTCCACTGTAAGTAGCACACTGGCTTTGTTCACTTTTCTGTGTGCCCAGGCACAAGCGAATGTCTTTGAATGGGTTTCAGGAATGCCACAGTATGGCCCCCTTCAGCCCTTACAGTGGCTGGCAGACAGGTGGTCATCTCTGCCTAGGAGCTTTACCTGAGCACCACACAAATACTGCCATTTCGCCCTGTGGATCATGATGGGGTAAAGATGGGGAAGCATTATTCCCTTGCCCCCTCCCCCGCCTCTCGTCTTTCTCTTTTTCTGCATATTGCCAGTGCTCATCACCTCTTTTCTGTTTCTTTGTGGTTTATAG
Seq C2 exon
ATGATCATGACGCAGTCCTGAGGTTTAATGGGGCACCCACAGCCAACTTCCAACAAGATGTGGGCACAAAAACTACCATTCGCCTGATGAACTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000073849-ST6GAL1:NM_173216:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=NA C2=0.014
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=PU(26.9=34.5)
A:
NA
C2:
PF0077713=Glyco_transf_29=FE(12.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)