GgaINT0033776 @ galGal4
Intron Retention
Gene
ENSGALG00000005550 | ST6GAL1
Description
beta-galactoside alpha-2,6-sialyltransferase 1 [Source:RefSeq peptide;Acc:NP_990572]
Coordinates
chr9:4764285-4768020:+
Coord C1 exon
chr9:4764285-4764960
Coord A exon
chr9:4764961-4767922
Coord C2 exon
chr9:4767923-4768020
Length
2962 bp
Sequences
Splice sites
5' ss Seq
TAGGTTGGT
5' ss Score
4.39
3' ss Seq
TCACTCTGTTCTGCTTTCAGATA
3' ss Score
11.8
Exon sequences
Seq C1 exon
GCCCAGCTTCCTGCCCCGTGCTCACTGTCCCGTTTGGATGCGACGTACACTATGGTTCACATCAATGTGCTGAAAAAATTCATGTGTGTTCTTGTGGTGATACTGATAGCTCTGACGGTTTGCCTGTGGAAAGAGACAAGAGGAAGCTACTATGTTCCTTTGAAGAACGATGGCACACAGGTTCACAGGGCTCTGGACAAATGGAACCTACTTAAATCGCAGGGCCTCCTCCATGAAGCTGGTGGTGAAATGGGTCAGATGCCTAAAGCATTGCCCAACAACCAAAACAAGGTAAAAGGCATCACCTCTGGAGCAGTAGAGAAGTCCAGGAAAGCAGCAGAGCACGTGAAGGTATGGGATAAGGACAGCTCGTCCAGAAACCTCATACCCAGGCTGCAGAAGGTCAGGAAGAACTACCTGTCCATGAACAAGTACAATGTGACTTACAATGGGAAGATGAATGCTGCTAAACTCAGCCCAGAGCAGCTGCTGTGCCGGCTGCGGGACAGGGTGAACGTGACCATGATACGGGGATCGGACGGTCCATTTAATTCCTCAGAATGGCAGCACTACCTGCCAGACAAAAGCCTCAATGAGACGGTGGGCCGCCTGGGTCGCTGTGCTGTTGTGTCCTCAGCAGGCTCTCTGAAATCATCTCACTTGGGACCAGAGATAG
Seq A exon
GTTGGTATTTTTCGACTAAGATAAAGTCAAGCAATACTGTTGTGTAACTTGCACTGAACGGAAGAGGCCTAGCGTCACACTCGCACTCTGCTGGAGCCACAGAGGTGTTTGAAATAAGCTGCAATCTATCCTTGCAGTTCTCTGATGGTGAACGGTGCAGCCTAGGAGGAGATGGGAATAATGATGAGATACTCCCCTCCTCTCTGAGTGCATACGCTGCACATCGTAGGCTTCCTTACCATGCTATAGATGGCGGTGTCTGTGAGTGTTAGGCCTTGGGCATGCCTGCTCCCATGAGCAACCACTGATGGCAGCAGCAGTTTCTCAGAAACGAAAAGGATTGTGATAGAAAACAGCTGCGGTCTTAACTCTGGAATCTTGCAAAGCTTTGACCGTGGCATAACGCTGCTCTTCCTCAGCAGGAAAACAGTAAGTAAAAATATTTAGCCAAGTGGGTAAGCCCCAGGGGAGAGCAAAGGGTTGGACTGAGCTGAGAGGATGTGACTTCTGTGCAGGTAGTTCCTTTATAGCGAGTCCGTTCAACTTTCATGATTGTGTTGACCTCACCAGAAAGTAGAACTAATACTGAATACCAGGAAGAGGTTTGGCACCCCAAGTGTTTGTTTCTTGAGAGGGTGTGGGATGGGTTGAGTAATGCTTATGTGCTTATTGCACGCTCAACAGTCAGAAACTTTTTTTTTATTCAGAAAGACTCCCGCAGAGAAGGAAGTAACAAAAACAGCAAAAAAAAAAAACCACCCAAAAAACAAAAAACCCCAACACAACTAAAGCACAAAAGGGAAAAAACCCACTGAGCACAGCCGTGAGCAGTCTGCTCTAGCTGACCCAGCTCTGAGCAGAGGGCTGGCCTTGGGCAGTCTTCAGAGGTCTGCTCTGACTCTTAAGTCTTGCTTGTGATCATCCAACGGTGGCACGGCCTCACTGAGCCCACGGGGCAGCTGAGTGTGAGCGGCCCAGCAGTTGAGGTCTGTGCTGTGCTACAGCCACAGGACAGGACAGACCCGGGAGGGCTCCATTTGTTCTGTGGAGTTGGGCGATACTTTGCAAAGTCTCATCTGCCCGTATTGATCTGAAGTCAGTGCAGTGAGTAACAAATGCTGAAGCATCGGTCTTGTACTGTGGGTTGTAAAGAAGTGAGTGTTGATACTGAAGCACTTTGTATCTTTAAGGAAGCAGCATCCAGGGTCTCTGCAGCCTTCAGCTCTGGGTTTTGTGCTTGGCAGAAAAGTCTCCCGTGGCCGCAGTCCCACTTTGTTCACTGCTTATTGTTTGGGCCTCTGTGAAGATTCACACTGCACTTAACTCACTGCAGGAGGAGCATGTATGATTGTTCTCTCCTGTAGAACTTGCTTGCAGGCTTCAGTACTTCAGTGTGTTTGTAATTTATCAGCTGGATCAGGTCCCTTTGGCCTGTACTAAGCTGGAAGCAGCCTTCATCCTCTTGAAACAAGTAGACAGATAACCCTTTAATACATTATTCAGGAACAACTGAGGGAGACCTTTCAGCTGCAGTGGCAGGCTGCTGTGGGGAGGTGAGGGTTTGTGCTGACACGTGCCCAGAGGCTGTCCCCAATGGGTGCCCCTCAGGGCAGGGGGGCAGGTGCTGGGTGAGGACGAACAGCATGAGCTGTGTTGAAGTGCCCCGAAGGATGTGATGAGAAGGGCGGTGGCAGCAGTAACCAGGGCTGATACAAATTGCTGTTGACAAGTGGTTGATGTAATTGTTTTAGCCTCCTGACGAGCGTTTGAGGCCAGGTAGGTCCAGATCTAGGAAGACAGACCTGACTTTGAGCACCTTTCTGGTCTGGAGCTTTCTCAGAAGTGCCCTGACCTCCTGTTTGATGCTCTCCTGTCACCCAGCTGGCTTGTTTCCAGCAGTGCCTGTGCTGACTCCTGTGATGAGACTACTCAGGAGCTGAGGATGCTATCACAGCACGTTGTCATCCAGCATGCAAGTGCTGGATCTGGGCCGGGCGATGGATGGGCTGTGCTGCTGCTGCTGCAGAGCGGAGAGCATGCCAGGTGTGCAGAGCAGTGTCTCTGTGCCTGCAGCCTCCTAGTCTGTCCCTTGGGCTGGAGCATCAGTCTGTTCCAGGTCACATCGGATGAATTCTGGAAAGGTCACTGTGTAACGTGCCCTGGGTGAATGCCATTAACCCTGCTGCTGTCCCAATTAGCAGGCCTTGTGTCTGACTCACAGACTGGAACCTTTTAGCTCATGCAGGCATTTCTGCTTATGATTCTGCTTGGTTTTGGCTGCTCAGGAGCCCAGTCTCACTGCAGCTCCTTCAGCTGGTTGCTGTGAATAGTGAGGGATTCAGGAGTGCATCTCTGTTTATGTACAGTTTTTCCCAGTTTGGGCCTGACACATTTCAATGGAGGAAAGGTTGTGGTTTGGCTGGGGGAGGGTGCCAAAAGGGAACTAAATCTTAAAATGAAGCCTTTGCTTCGAAGCTTGGTTGAGCACAAGAGACTGCTGAATAATTATTCTTTAAAGGGCTGGGGGTATTTTTTCTGTGTAGCCACATCAAATGAGGAAGTGTGGTAGATCAGGATGATCCTGTTAAATGGGCAGTGCTTGCCTTGATGAGTTCTTGGTGAGAACGAGGTTTGTGAGTTCCTGTGAAAAACCAAATTGAGGAAATGCCAGGCACGACACAACCACTGGGAGACAGACGGCGTGCCACGATGAGTTCATCAAACACCATTTTTAAGTGTACATTTGAGGTGTGATAATGCTTGGTGTCTGGCTCAAGTTGTGTGCTATGACTATGAAGTCATAGAATTATCAAGGTTGGAAATGACCTTCGAGGTCATCAAAGTCCGACCGTCAGCCCATCCCCACCATGCCTGCTGGGCTGGTACTTGTGGTTACGTGGAAAGTCTCCGTAGCTCCAAAGCCAGCTGTGAGCTCACTGCTTTCACTCTGTTCTGCTTTCAG
Seq C2 exon
ATAGCCATGATGCTGTCTTGCGGTTTAATGGGGCTCCTGTCAAAGGATTTCAAGAAGATGTGGGGCAAAAAACGACGATTCGTCTTGTCAACTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005550:ENSGALT00000008903:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=PU(27.3=34.4)
A:
NA
C2:
PF0077713=Glyco_transf_29=FE(12.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]