GgaEX0007744 @ galGal4
Exon Skipping
Gene
ENSGALG00000005550 | ST6GAL1
Description
beta-galactoside alpha-2,6-sialyltransferase 1 [Source:RefSeq peptide;Acc:NP_990572]
Coordinates
chr9:4764285-4771003:+
Coord C1 exon
chr9:4764285-4764960
Coord A exon
chr9:4767923-4768020
Coord C2 exon
chr9:4770902-4771003
Length
98 bp
Sequences
Splice sites
3' ss Seq
TCACTCTGTTCTGCTTTCAGATA
3' ss Score
11.8
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
ACAGGTTCACAGGGCTCTGGACAAATGGAACCTACTTAAATCGCAGGGCCTCCTCCATGAAGCTGGTGGTGAAATGGGTCAGATGCCTAAAGCATTGCCCAACAACCAAAACAAGGTAAAAGGCATCACCTCTGGAGCAGTAGAGAAGTCCAGGAAAGCAGCAGAGCACGTGAAGGTATGGGATAAGGACAGCTCGTCCAGAAACCTCATACCCAGGCTGCAGAAGGTCAGGAAGAACTACCTGTCCATGAACAAGTACAATGTGACTTACAATGGGAAGATGAATGCTGCTAAACTCAGCCCAGAGCAGCTGCTGTGCCGGCTGCGGGACAGGGTGAACGTGACCATGATACGGGGATCGGACGGTCCATTTAATTCCTCAGAATGGCAGCACTACCTGCCAGACAAAAGCCTCAATGAGACGGTGGGCCGCCTGGGTCGCTGTGCTGTTGTGTCCTCAGCAGGCTCTCTGAAATCATCTCACTTGGGACCAGAGATAG
Seq A exon
ATAGCCATGATGCTGTCTTGCGGTTTAATGGGGCTCCTGTCAAAGGATTTCAAGAAGATGTGGGGCAAAAAACGACGATTCGTCTTGTCAACTCCCAG
Seq C2 exon
CTGGTCACTGTTGAGGAGCAGCAGTTCCTGAAAGATGCGCTGTATAACACTGGAATCTTGATTGTCTGGGATCCAGCACCGTATCATGCAGAAATCCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005550-'39-16,'39-12,42-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=PU(27.3=34.4)
A:
PF0077713=Glyco_transf_29=FE(12.1=100)
C2:
PF0077713=Glyco_transf_29=FE(12.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACCATGATACGGGGATCGGA
R:
CTGCTGCTCCTCAACAGTGAC
Band lengths:
182-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]