RnoEX0086453 @ rn6
Exon Skipping
Gene
ENSRNOG00000001823 | St6gal1
Description
ST6 beta-galactoside alpha-2,6-sialyltransferase 1 [Source:RGD Symbol;Acc:3676]
Coordinates
chr11:80933863-80977854:-
Coord C1 exon
chr11:80977209-80977854
Coord A exon
chr11:80967260-80967357
Coord C2 exon
chr11:80933863-80933961
Length
98 bp
Sequences
Splice sites
3' ss Seq
CCATTTCCTGTGGTTTACAGATA
3' ss Score
8.8
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GGCCCTTACACTGCAAGCCAAGGAATTCCAGATGCCCAAGAGCCAGGAGAAAGTGGCCATGGGGTCTGCTTCCCAGGTTGTGTTCTCAAACAGCAAGCAAGACCCTAAGGAAGACATTCCAATCCTCAGTTACCACAGGGTCACAGCCAAGGTCAAACCACAGCCTTCCTTCCAGGTGTGGGACAAGGACTCCACATACTCAAAACTTAACCCCAGGCTGCTGAAGATCTGGAGAAACTATCTGAACATGAACAAATATAAAGTATCCTACAAGGGACCGGGGCCAGGAGTCAAGTTCAGCGTAGAAGCACTGCGTTGCCACCTTCGAGACCATGTGAACGTGTCTATGATAGAGGCCACAGATTTTCCCTTCAACACCACTGAGTGGGAGGGTTACCTGCCCAAGGAGAACTTTAGAACCAAGGTTGGGCCTTGGCAAAGGTGTGCCGTCGTCTCTTCTGCAGGATCTCTGAAAAACTCCCAGCTTGGTCGAGAGATTG
Seq A exon
ATAATCATGATGCAGTTCTGAGGTTTAATGGGGCCCCTACCGACAACTTCCAACAGGATGTGGGCTCAAAAACTACCATTCGCCTAATGAACTCTCAG
Seq C2 exon
TTAGTCACCACAGAAAAGCGCTTCCTCAAGGACAGTTTGTACACCGAAGGAATCCTAATTGTATGGGACCCATCCGTGTATCATGCAGATATCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001823_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=PU(27.8=36.5)
A:
PF0077713=Glyco_transf_29=FE(12.2=100)
C2:
PF0077713=Glyco_transf_29=FE(12.2=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCACAGATTTTCCCTTCA
R:
TGAGGAAGCGCTTTTCTGTGG
Band lengths:
175-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]