DreEX0075572 @ danRer10
Exon Skipping
Gene
ENSDARG00000044514 | st6gal1
Description
ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 [Source:ZFIN;Acc:ZDB-GENE-060322-3]
Coordinates
chr21:31139342-31146130:+
Coord C1 exon
chr21:31139342-31139606
Coord A exon
chr21:31142792-31142889
Coord C2 exon
chr21:31145956-31146130
Length
98 bp
Sequences
Splice sites
3' ss Seq
ATAAAGTTTCTGAATTGTAGATT
3' ss Score
4.69
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GCAATGAATAAATATGGAGTCAAGTACCCTGCAACAGTGAGAGCAGCACACCGCTACAAACTCAGTGGACCAGAAATTCTTTGTGAAATTAAGGAGAAAGTTCAGGTCACAACTTTAACACCAGATATGGAGCCATTTTCTGGGTTTCCATGGGGCTCTCAGTTACCTCCACGCCAAATAACCTCTGATGTCGGCCCGTTCAAAACCTGTGCAGTGGTGTCGTCTGCAGGATCTCTCAAAAACTCTGGATTAGGAAAGGAAATAG
Seq A exon
ATTCTCATGACGCAGTGATACGATTCAATGCCGCACCGACAGCTGGTTTTGAGACAGACGTGGGCTCCAAAACAACAGTGCGCCTTATTAATTCACAG
Seq C2 exon
TGGTTCAACAAGACAGATTACCCCATATTTAAACAGTATCAGCGATATCGCCGCTTGCACCCTCAGCAGCCATTTTACATTGTACATCCGCGAATGGAATGGCAGCTGTGGCAGAGAATACAAGACAACATGGGTGAAGCCATCCAAAAAAATCCACCCTCATCAGGCCTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044514_MULTIEX1-4/5=3-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.007
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=PU(23.3=65.2)
A:
PF0077713=Glyco_transf_29=FE(12.9=100)
C2:
PF0077713=Glyco_transf_29=FE(23.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAAACCTGTGCAGTGGTGT
R:
GCCATTCCATTCGCGGATGTA
Band lengths:
169-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]