RnoEX0086458 @ rn6
Exon Skipping
Gene
ENSRNOG00000046515 | St6gal2
Description
ST6 beta-galactoside alpha-2,6-sialyltransferase 2 [Source:RGD Symbol;Acc:1559663]
Coordinates
chr9:7001357-7027030:+
Coord C1 exon
chr9:7001357-7002330
Coord A exon
chr9:7022983-7023080
Coord C2 exon
chr9:7026929-7027030
Length
98 bp
Sequences
Splice sites
3' ss Seq
TGTCACTTATATGCCCTTAGATT
3' ss Score
8.56
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CCGGCAGGGTGCCCTGGGGCTGCCATCTCCGGGGGAGTCCTCATGGCAATCAGGACCTGGTCAGCCCAAGCAGGAGAAGCTGCGTCACCCAAGGAGAGGCAGTTTGCCTGAGGAAGCCTATGATAGTGACATGCTGTCGACCTCCATGTCCAGAGCCTTCCTGTACCGGCTCTGGAAGGGAACCGTGTCCTCTAAGATGTTGAACCCGCGCCTGCAGAAAGCCATGCGCTACTACATGTCCTTTAACAAGCACGGTGTGCGCTTCAGCAGGCGGGGGCGGCGTGAGGCACGACGTACAGGGCCAGAGCTGCTGTGCGAGATGCGCAAGCGTGTGCGTGTGCGCACCTTGGACGGCAAAGAGGCGCCCTTCTCAGGGCTGGGCTGGCGGCCTCTGGTACCTGGGGTCCCTCTGAGCCAGTTGCACCCCCGCGGTTTGCGCAGCTGCGCAGTTGTAATGTCTGCCGGAGCCATCCTGAACTCCTCCTTGGGGGAGGAAATCG
Seq A exon
ATTCTCATGATGCAGTTTTGAGATTTAACTCTGCCCCTACACGTGGCTATGAGAAAGATGTCGGAAATAAAACCACAGTACGCATCATTAATTCTCAG
Seq C2 exon
ATTCTGGCCAACCCCAGCCATCACTTCATTGACAGTTCTTTATATAAAGATGTTATTCTGGTAGCCTGGGATCCAGCTCCTTATTCTGCCAATCTTAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046515-'7-8,'7-7,9-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.299 A=0.030 C2=0.000
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=PU(34.9=33.1)
A:
PF0077713=Glyco_transf_29=FE(10.8=100)
C2:
PF0077713=Glyco_transf_29=FE(11.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGAGGCGCCCTTCTCAG
R:
ATGAAGTGATGGCTGGGGTTG
Band lengths:
175-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]