HsaEX6014934 @ hg19
Exon Skipping
Gene
ENSG00000144057 | ST6GAL2
Description
ST6 beta-galactosamide alpha-2,6-sialyltranferase 2 [Source:HGNC Symbol;Acc:10861]
Coordinates
chr2:107449021-107460490:-
Coord C1 exon
chr2:107459491-107460490
Coord A exon
chr2:107450505-107450602
Coord C2 exon
chr2:107449021-107449122
Length
98 bp
Sequences
Splice sites
3' ss Seq
TGTCACTTATGTGCCCTTAGATT
3' ss Score
9.55
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GGGATTCCCTTCCCCCGGGGAGCCAGGCCCACGGGAGGGGGCTTTTCCGGCTGCACAGGTCCAGAGGAGGCGGGTGAAGAAGAGGCACCGGAGGCAGAGAAGGAGCCACGTGTTGGAGGAGGGCGACGACGGCGACAGGCTGTACTCCTCCATGTCCAGGGCCTTCCTGTACCGGCTCTGGAAGGGGAACGTCTCTTCCAAAATGCTGAACCCGCGCCTGCAGAAGGCGATGAAGGATTACCTGACCGCCAACAAGCACGGGGTGCGCTTCCGCGGGAAGCGGGAGGCCGGGCTGAGCAGGGCACAGCTGCTGTGCCAGCTGCGGAGCCGCGCGCGCGTGCGGACGCTGGACGGCACCGAGGCGCCCTTTTCTGCGCTGGGCTGGCGGCGCCTGGTGCCCGCCGTGCCCCTGAGCCAGCTGCACCCCCGCGGCCTGCGCAGCTGCGCTGTCGTCATGTCTGCAGGCGCAATCCTCAACTCTTCCTTGGGCGAGGAAATAG
Seq A exon
ATTCTCATGATGCGGTTTTGAGATTTAACTCTGCTCCTACACGTGGTTATGAGAAAGATGTTGGGAATAAAACCACCATACGCATCATTAATTCGCAG
Seq C2 exon
ATTCTGACCAACCCCAGCCATCACTTCATTGACAGTTCACTGTATAAAGACGTCATTTTGGTGGCCTGGGACCCTGCCCCATATTCCGCAAATCTTAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144057-'5-5,'5-4,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.314 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=PU(27.0=22.5)
A:
PF0077713=Glyco_transf_29=FE(12.2=100)
C2:
PF0077713=Glyco_transf_29=FE(12.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGGCGCCCTTTTCTG
R:
ATGAAGTGATGGCTGGGGTTG
Band lengths:
173-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)