MmuEX0045137 @ mm9
Exon Skipping
Gene
ENSMUSG00000024172 | St6gal2
Description
beta galactoside alpha 2,6 sialyltransferase 2 [Source:MGI Symbol;Acc:MGI:2445190]
Coordinates
chr17:55621203-55635691:+
Coord C1 exon
chr17:55621203-55622192
Coord A exon
chr17:55630241-55630338
Coord C2 exon
chr17:55635590-55635691
Length
98 bp
Sequences
Splice sites
3' ss Seq
TGTCACTTATGTGCCCTTAGATT
3' ss Score
9.55
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CCACAGGCAGGGTGCACTGGAGCTGCCATCTCCAGGGGAGACATCATGGCGATCAGGACCTGTTCAGCCCAAGCAGAAGCTGCTCCACCCAAGGCGAGGCAGCTTGCCTGAGGAAGCCTATGACAGCGACATGCTGTCAGCCTCCATGTCGAGAGCCTTCCTGTACCGGCTCTGGAAGGGGGCCGTGTCCTCTAAGATGTTGAACCCGCGCCTGCAGAAGGCCATGCGTTACTACATGTCCTTCAACAAGCATGGTGTGCGCTTCCGCAGGCGGGGTCGGCGTGAAGCTACACGTACAGGGCCGGAGCTGCTGTGTGAGATGCGCAGACGTGTGCGTGTGCGCACGTTGGACGGCAGAGAGGCGCCCTTCTCGGGGCTGGGCTGGCGGCCTCTGGTACCAGGTGTACCTCTGAGCCAGTTGCACCCGCGCGGTCTGAGCAGCTGCGCAGTTGTCATGTCTGCCGGTGCCATCCTGAACTCCTCCTTGGGGGAGGAAATCG
Seq A exon
ATTCTCATGATGCAGTTTTGAGATTTAACTCTGCCCCTACACGTGGCTATGAGAAAGATGTCGGAAATAAAACCACAGTACGCATCATTAATTCTCAG
Seq C2 exon
ATTCTGGCCAACCCCAGCCATCACTTCATTGACAGTGCTTTATATAAAGATGTTATCCTGGTAGCCTGGGATCCTGCTCCTTATTCTGCCAATCTTAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024172_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.242 A=0.040 C2=0.000
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=PU(27.5=23.5)
A:
PF0077713=Glyco_transf_29=FE(12.1=100)
C2:
PF0077713=Glyco_transf_29=FE(12.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCTCTGAGCCAGTTGCAC
R:
ATAAGGAGCAGGATCCCAGGC
Band lengths:
181-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: