BtaEX6044320 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000703 | ST6GAL2
Description
Bos taurus ST6 beta-galactosamide alpha-2,6-sialyltranferase 2 (ST6GAL2), mRNA. [Source:RefSeq mRNA;Acc:NM_001008668]
Coordinates
chr11:45441696-45450920:+
Coord C1 exon
chr11:45441696-45442602
Coord A exon
chr11:45449115-45449212
Coord C2 exon
chr11:45450819-45450920
Length
98 bp
Sequences
Splice sites
3' ss Seq
TTGTCACATGTGTCCCTCAGATT
3' ss Score
7.86
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
TCCGGGCACGTCGGGGCGCCTCTTCCCTGGGGACCCAGGCCCGGAGGGGGCTCGGCCGCCACGCGCAGCCCCCGGACGGCGGGCAAAGCGAGGGCCACGGAGGCAAAGCCTGAGCGCGCGGGGCGAGGACGGGGAGCGGCTGTACTCGTCCATGTCCCGGGCCTTGCTGCGACGGCTCTGGAAGGGCGATGCGTCGGCGCGCATGCTGCACCCGCGTCTGCAGAAGGCCATGGGTGCCTACCTGCGCGCCAACAAGCACGGCGTGCGCTTCCGGGGGCGCCGCGCATCCGGGCGGAGCCGCACCGAGCTGCTGTGCGCGTTGCGGGGCCGCGTGCAGGTGCGCACCCTGGACGGCACTGAGCCGCCCTTCTCGGCACTCGGCTGGCGCGCACTGGTCCCTCCGGTGCCACTCAGCCGGCTGCTCCCGCGCAGGCTCCGGACCTGCGCCGTGGTCACGTCGGCAGGCGCCATCCTCAACTCATCTCTGGGCGAGGAGATAG
Seq A exon
ATTCCCATGATGCGGTTTTGAGGTTTAACTCTGCTCCTACACGTGGCTACGAGAAAGATGTCGGAAATAAAACCACCGTCCGCATCATTAATTCCCAG
Seq C2 exon
ATTCTAACCAACCCCAGCTACCACTTCATGGACAGTGCATTGTATAAAGATGTCATCTTGGTGGCCTGGGACCCAGCTCCTTATTCTGCAAATCTTAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000703-'7-2,'7-1,8-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.341 A=0.030 C2=0.000
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=PU(26.7=24.4)
A:
PF0077713=Glyco_transf_29=FE(12.2=100)
C2:
PF0077713=Glyco_transf_29=FE(12.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTGGACGGCACTGAG
R:
AGTGGTAGCTGGGGTTGGTTA
Band lengths:
182-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]