GgaEX1055705 @ galGal4
Exon Skipping
Gene
ENSGALG00000016803 | ST6GAL2
Description
beta-galactoside alpha-2,6-sialyltransferase 2 [Source:RefSeq peptide;Acc:NP_001161219]
Coordinates
chr1:135021538-135029750:-
Coord C1 exon
chr1:135028805-135029750
Coord A exon
chr1:135024353-135024450
Coord C2 exon
chr1:135021538-135021639
Length
98 bp
Sequences
Splice sites
3' ss Seq
CCCATTATTTATGCTCCCAGATT
3' ss Score
6.61
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
AAAATTCATCTCAGCCGATGAGGATAATCCAAAAGAAAGTATTTTACAGAACAACTGGAGCCGTCAGAGGAGAATGAGGAGAAGGAGCACAAAGCACAGAAGAAGCCAGATGCTTGATGAATCTGATGACTGGGATGGGCTGTATTCTACAATGTCGAAATCCTTTCTATACAAGCTCTGGAAAGGAGATGTCTCTTCCAAGATGCTGAACCCTCGACTGCAGAAGGCGATGAAAGATTATTTGAGCACCAATAAGCATGGGGTGCGGTTCAAAGGGAAACGAAACTCGAAGCTGACAGGCGACCAGCTTTTCTGCGAGCTGAAAGAAAGGGTGGATGTGAAAACAATAGATGGCAAGGAAGCTCCCTTCTCCACTCTTGGATGGGAGAAGCACGTTCCTCAAATTCCACTGGGCAAATTGTATACACATGGCTTTGGGAGCTGTGCCGTAGTTATGTCTGCTGGTGCGATACTGAACTCCTCTCTAGGGGATGAAATAG
Seq A exon
ATTCTCATGATGCTGTTCTAAGATTTAATTCTGCTCCAACACGCGGCTATGAAAAAGATGTTGGAAATAAAACAACGATGCGAATCATTAACTCTCAG
Seq C2 exon
ATTCTCACCAACCCAAACCATCACTTTGTTGACAGCTCCTTGTACAAAGATGTTATCTTAGTAGCCTGGGATCCTGCTCCCTACTCTGCAAATCTGAATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016803-'15-14,'15-11,16-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=0.053 C2=0.000
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=PU(28.4=22.7)
A:
PF0077713=Glyco_transf_29=FE(11.9=100)
C2:
PF0077713=Glyco_transf_29=FE(12.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGCAAGGAAGCTCCCTTC
R:
AGTGATGGTTTGGGTTGGTGA
Band lengths:
176-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]