DreEX0075576 @ danRer10
Exon Skipping
Gene
ENSDARG00000039335 | st6gal2a
Description
ST6 beta-galactosamide alpha-2,6-sialyltranferase 2a [Source:ZFIN;Acc:ZDB-GENE-060322-4]
Coordinates
chr9:6104739-6145815:+
Coord C1 exon
chr9:6104739-6105729
Coord A exon
chr9:6124075-6124172
Coord C2 exon
chr9:6145163-6145815
Length
98 bp
Sequences
Splice sites
3' ss Seq
TCTAATTTCTGTCATTCCAGACT
3' ss Score
5.95
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CCAGGATTCACCTCAAGAAGACGAGGATGAAGAGGAGGAGGTGATTGGGGGGGAAGAGGAGGATGAGGAGGGTGGTGATGAAGGTAGAGGGAGGACCACCAAACGGGTTGCAAGGCATGGGAGCTCTGACCCGCATGAATATTACGTTCCCAGATACAAATCCATAGTTCATGGTCTGTGGAAAGGGAGTTTGTCGATGGGGATGCTCAGTCCACGCCTGCAGAGGGCTATGAAAGACTACCTGAATAATAATAAGCATGGAGTGGCCTACAGGGGGCACCGGAAGGCGAAGCAGAGCCGCCAGCAGGTGCTGTGTGAGCTGAAAAAAAGGGAGAAGATTCGAACATTGGATGGGGCCGAGATGCCTTTCTCCAAATTGGGCTGGCAGAAGATTGTGCCTGCATTACCCCTAAGCCAGATCCACAGGCCAGGCTTAAAGACCTGTGCTGTGGTCACCTCTGCTGGAGCCATGCTGCACTCTGGACTTGGCAAGGAGATTG
Seq A exon
ACTCCCATGATGCAGTGCTGCGGTTTAATACAGCTCCTACTGTGGGTTATGAAAGAGACGTTGGGAATAAAACCACCATACGCATCATCAACTCTCAG
Seq C2 exon
GCATCCTGCTAATGATGTCCTTATGTGAAGAGGTGCATGTGTACGAGTACATTCCCTCCCTGCGTCAGACGGACCTGTGCCATTATCACGAGCGCTACTACGATGCCGCCTGCACTCTGGGTGCGTATCATCCTCTGCTCTACGAGAAGATGCTCATCCAGCGCATGAACATCGGCTCAGAGGATGAGCTCAAACGCAAAGGCAAAGTCACACTGCCCGGATTCAACAAAGTCCACTGTGAGCCTTGAACACACACACACACACACACGCAATAACAGCCTTTCTAACGCAGAGGAGAACCACAGACATCCAGCCGGCTCATTAAAAAAACTGACTGTGTGGGACTAAACCTTCTGCTGTAGTTGTAGATCTCTCTGAAATGCATTTCCTGAGCCTATGCTTAAAGATGGTCCAAACAGCAATAGACACGTGACGAGAAAAGCTTTTTAGATGTTTGTGATGTTGAAAGCCATCAAAAAAAAAAACAGTATTTCTTATAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039335_MULTIEX1-3/5=2-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.536 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=PU(39.4=40.6)
A:
PF0077713=Glyco_transf_29=FE(10.1=100)
C2:
PF0077713=Glyco_transf_29=PD(20.8=79.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCCAGGCTTAAAGACCTG
R:
TAGCGCTCGTGATAATGGCAC
Band lengths:
174-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]