GgaEX0007744 @ galGal3
Exon Skipping
Gene
ENSGALG00000005550 | ST6GAL1
Description
NA
Coordinates
chr9:6319444-6326162:+
Coord C1 exon
chr9:6319444-6320119
Coord A exon
chr9:6323082-6323179
Coord C2 exon
chr9:6326061-6326162
Length
98 bp
Sequences
Splice sites
3' ss Seq
TCACTCTGTTCTGCTTTCAGATA
3' ss Score
11.8
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
ACAGGTTCACAGGGCTCTGGACAAATGGAACCTACTTAAATCGCAGGGCCTCCTCCATGAAGCTGGTGGTGAAATGGGTCAGATGCCTAAAGCATTGCCCAACAACCAAAACAAGGTAAAAGGCATCACCTCTGGAGCAGTAGAGAAGTCCAGGAAAGCAGCAGAGCACGTGAAGGTATGGGATAAGGACAGCTCGTCCAGAAACCTCATACCCAGGCTGCAGAAGGTCAGGAAGAACTACCTGTCCATGAACAAGTACAATGTGACTTACAATGGGAAGATGAATGCTGCTAAACTCAGCCCAGAGCAGCTGCTGTGCCGGCTGCGGGACAGGGTGAACGTGACCATGATACGGGGATCGGACGGTCCATTTAATTCCTCAGAATGGCAGCACTACCTGCCAGACAAAAGCCTCAATGAGACGGTGGGCCGCCTGGGTCGCTGTGCTGTTGTGTCCTCAGCAGGCTCTCTGAAATCATCTCACTTGGGACCAGAGATAG
Seq A exon
ATAGCCATGATGCTGTCTTGCGGTTTAATGGGGCTCCTGTCAAAGGATTTCAAGAAGATGTGGGGCAAAAAACGACGATTCGTCTTGTCAACTCCCAG
Seq C2 exon
CTGGTCACTGTTGAGGAGCAGCAGTTCCTGAAAGATGCGCTGTATAACACTGGAATCTTGATTGTCTGGGATCCAGCACCGTATCATGCAGAAATCCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005550-'17-6,'17-5,19-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.110 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=PU(27.3=34.4)
A:
PF0077713=Glyco_transf_29=FE(12.1=100)
C2:
PF0077713=Glyco_transf_29=FE(12.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCATGATACGGGGATCGGA
R:
CTGCTGCTCCTCAACAGTGAC
Band lengths:
182-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]