MmuEX6061681 @ mm9
Exon Skipping
Gene
ENSMUSG00000022885 | St6gal1
Description
beta galactoside alpha 2,6 sialyltransferase 1 [Source:MGI Symbol;Acc:MGI:108470]
Coordinates
chr16:23321106-23355037:+
Coord C1 exon
chr16:23321106-23321751
Coord A exon
chr16:23328415-23328512
Coord C2 exon
chr16:23354939-23355037
Length
98 bp
Sequences
Splice sites
3' ss Seq
CCATTTCCTGTGGCTTACAGATA
3' ss Score
8.21
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GGCTCTTACATTGCAAGCCAAGGTATTCCAGATGCCGAAGAGCCAGGAGAAAGTGGCCGTGGGGCCTGCTCCCCAGGCTGTGTTCTCAAACAGCAAACAAGACCCTAAGGAAGGCGTTCAGATCCTCAGTTACCCCAGGGTCACAGCCAAGGTCAAGCCACAGCCCTCCTTGCAGGTGTGGGACAAGGACTCCACATACTCAAAACTTAACCCCAGGCTGCTGAAGATCTGGAGGAACTATCTGAACATGAATAAATATAAAGTGTCCTACAAGGGGCCGGGACCAGGAGTCAAGTTCAGCGTAGAGGCGCTGCGCTGCCACCTTCGAGACCACGTGAATGTGTCTATGATAGAGGCCACAGATTTTCCCTTCAACACCACTGAATGGGAGGGTTACCTGCCCAAGGAGAACTTCAGAACCAAGGCTGGGCCTTGGCATAAGTGTGCCGTCGTGTCTTCTGCAGGATCTCTGAAGAACTCCCAGCTGGGTCGAGAGATTG
Seq A exon
ATAATCATGATGCGGTCCTGAGGTTTAATGGGGCACCTACAGACAACTTCCAACAGGATGTGGGCACAAAAACTACCATCCGCCTAGTGAACTCTCAG
Seq C2 exon
TTAGTCACCACAGAAAAGCGCTTCCTGAAGGACAGTTTGTACACCGAAGGAATCCTGATTCTGTGGGACCCATCTGTGTATCATGCAGACATTCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022885-'11-15,'11-14,12-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=PU(27.8=36.5)
A:
PF0077713=Glyco_transf_29=FE(12.2=100)
C2:
PF0077713=Glyco_transf_29=FE(12.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAAGGAGAACTTCAGAACC
R:
ACACAGATGGGTCCCACAGAA
Band lengths:
180-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: