MmuINT0153218 @ mm10
Intron Retention
Gene
ENSMUSG00000022885 | St6gal1
Description
beta galactoside alpha 2,6 sialyltransferase 1 [Source:MGI Symbol;Acc:MGI:108470]
Coordinates
chr16:23321033-23328439:+
Coord C1 exon
chr16:23321033-23321678
Coord A exon
chr16:23321679-23328341
Coord C2 exon
chr16:23328342-23328439
Length
6663 bp
Sequences
Splice sites
5' ss Seq
TTGGTATGT
5' ss Score
7.12
3' ss Seq
CCATTTCCTGTGGCTTACAGATA
3' ss Score
8.21
Exon sequences
Seq C1 exon
GCTTGGTTCCTGCTCCGATCAGTGGCTCTCCTGCCCGTACCATTCATTATGATTCATACCAACTTGAAGAGAAAGTTCAGCTGCTTTGTCCTGGTCTTTCTCCTGTTTGCCATCATCTGCGTGTGGAAGAAAGGGAGCGACTATGAGGCTCTTACATTGCAAGCCAAGGTATTCCAGATGCCGAAGAGCCAGGAGAAAGTGGCCGTGGGGCCTGCTCCCCAGGCTGTGTTCTCAAACAGCAAACAAGACCCTAAGGAAGGCGTTCAGATCCTCAGTTACCCCAGGGTCACAGCCAAGGTCAAGCCACAGCCCTCCTTGCAGGTGTGGGACAAGGACTCCACATACTCAAAACTTAACCCCAGGCTGCTGAAGATCTGGAGGAACTATCTGAACATGAATAAATATAAAGTGTCCTACAAGGGGCCGGGACCAGGAGTCAAGTTCAGCGTAGAGGCGCTGCGCTGCCACCTTCGAGACCACGTGAATGTGTCTATGATAGAGGCCACAGATTTTCCCTTCAACACCACTGAATGGGAGGGTTACCTGCCCAAGGAGAACTTCAGAACCAAGGCTGGGCCTTGGCATAAGTGTGCCGTCGTGTCTTCTGCAGGATCTCTGAAGAACTCCCAGCTGGGTCGAGAGATTG
Seq A exon
GTATGTATCTTTGTTAAGGGTTTCTATTGCTTCAACAAAACACCATCTCCAAAAGAGGAAGTTGGGGAGGAAAGGGTTTATTTGGCTCCCACTCTTACATTGTTTACCACCAGAAGAAAGTTAGGACAGGAACACAAACAGGTCTGGAACCTGGAGGCAGGAGCTGATACAGAGGCCATGGAGGGGTGCTGCTTACTGGCTTGCTCAGCCTGCTTTGCTATAGAACCCAGGACTATCAAACCCAGGAGTGGCCCTGACCACAGTGGGCTGGGCCCTCCCCCATTGATCACGGATTGAAATTGTCTTGCAATTTTAAGTGCCTTGCAGCTGGATCTCATGGAGACATTTCCTCCCTCTCCTCATGACTCTAGCTTGAGTCAACCTGACACACAAAACCAGCTAGTACAGCTGTTCTCTGAGCGGCCGATGGTCGTCCGAGGATTGACTGGGGAATTTCAAGGCCCTAGAACAGAGCCTAAGCATAGCTTTACAGATGGCAGAGTTGTCCCAGTCCAATGTTTTCCGATGTCTTTCCTGGAGTGAAAAATGCCCCCAAGGATGTCTAAAAAGACGGGACTCAGGCTTAAGTGGTTTTTCTTTTAATATAATTTTAAGAATTGATTCTTTGAGAATTTCACACGTGTATATAGTATATTTTAACAGCATTCAACACACTCCCTCCTTCTCCCTCCTAGATTTTTTTCCCACAACATCCCTTTCCAACTTTATGCCTTTTAAAAAATAACCTGCTGTGTCAAATTAATGCTGCCTGCATGCACATGGCTGTGTGCAGTATTCTGCTGTAACACAATCAGCCTCCCAGGTCCCACAGTCCTTGAGAAAACTGACCTTCACCCAGAAGCTATCAGGTGTTAATGGCTCCTCACCTATCTCCCCCCACTCCCCAACACACACACACACTGAGTTGTGGTTATTAGAATATCTTCCATCCCTCCCTCCCTCTCTTCCCCCTCCCTCCCTTCTCTTTCTCTTTCACTTTTGTTTTATTTTCTTTTTTCTAGACAGGGTTGCTCTGTGCAGCCCTGGCTGTCCTGGAACTTGCTCTGTAGACCAGGCTGGCCTTGAACTCAGGGATCCACCTGTCTCTGCCTCCCCAGTGCTGGGACAAAAGTCATGTGCCACCAGTATTCTATGGAGTGTTTCATTTAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGAGAGAGAAAGAAAGAGAGAGAGAGAAAGAAAGAGAGAGAGAAAGAAAGAGAGAGAAGAAAAAAGAGTTGTAGTGGTGCCAAAAGCAAAACTGCTGTCCACTGTGATATTTGAAAATACTTGAGGCATAGAACTGGACTTGTTTTCAGGGTCTAAGCTTCTGTTTGTTTCTAGTCCTGTGGAAGGTGGGCAGCCACGCGTCACAGAGGTCAGCCTTAGACACTGGCTGTCACCTTCACCTTGTATTCAGGCAGGGACTCTTTGTTTTTTGCCCTTGCTGGGTACACCAGGCTAGATGGCCTGTGAGCTCCTGGGGACTCTGCTGTCTCAGTCTCCCATCTCCTGCAGGAGTGCTGCAATTACAAGTGCAAGCCACCATGTGTGGCTTCAGGTGGGTTTTGAGAGACTGGCTTCCTGCTCTTAAGCTTGCATTTTGCCCTTGAACTGCCTCCCTCGTACTAGTTCTGATACATGCGAATTCCTTTAAGTCTCACTTGGCTAATTCTCTGCGAATTCCTTTTAGTCTCACTTGGCTAATTCTCTTAAAACCATATTAAATCAGCAGTATTTGGTGTGTGTCTGTATATACACGTGTGTGTGTGTGTGTCTGTGTGTGAGTGTGCATGTTTGCATGTACATGTATGTGAGGTGTGTGTCGTTTGTGTGTTATGTGTGTATGTATACATGTGTATATGTGCTGGGTATGGGCATGGAGGTCAGAAGACAACTCTATTGAGTTGGTTCTAACCTGCCACCTTTGTGTGGATTGTGTAGATCAAACTCAGGTTACCAGACTTGGTCAGTAAGAACTTTTGCCTGACGGACCTTTGAAGGCACTCCAGGTGCAATTCTTAAACTGGGGCAGCTTTAGGCTAATTTCAGGTGTTTCATGAATCCTTGAAGTTGCCTGCAAAGCGACCCAGACAGAGTAGGTGTTTGCAAATCTGTCTGTGTTTTTTTTCTAACAGTACACCTGATCCCCAGAGTGCTCTCTAACTGTAAGAGGCCCCATGTCAAAAGCACCAGTTTGCTATTCTTAAAACCCCTAGCAGCTACGATAGAGCCAGGGGCCGTTCATATTGGCAGACTTGCAACTGAGAGCTTTGCCACTTCTTTTTGTTATTTTGAGAGAACTCTGCCTGTGGAGAAAGCCTTGCTGTCAGGCTGGGGTCCTGGGAGGGTGACGTCACTGCTTTTAATTCTCTCCTGGTGACTGCCAGGGAGGATGGCCTAAAACCAGGCATAAGCTTTCAAAGAAGGAATGCAGACCCAAATTGAACTCTCTAGACCAGAAGGAGGTGAGATCACATTTTCTGTCTCTCTGTGTCAGCAGGGACCCTAATGGGGCTCACAAAATGGCCAGTACCACCCCAGCTTTGGTTTTTAGGATTTTTTTTTCCTTTCTAGAAACTAAATGCGATTGATTTCCATCATCCATTATAGAATTCATTTTCTTTCCTTTTTTGTTTCTTCTCTGCATCTGCAATAGAATAGTGGTGTTGGGATGGTCCATACTAGATAACCTCTAGCTCTTTCTATCAAGTTATTGTCTGGCTAAACTTGTGTCCAAGATTAAGGCAGATCCATATCTCTTTGTAAACTGGAGCTACAGATTCATTTTCATGTGCTTTATAATTAAAAGAAAAAAAAATTTTTTTTTTTAAAGTTTGAGTTCATTCATGAATTGGGTTGCAAAGCCAACTCATGTGCAGAACCTTGGTGGCTGTTTTTCTATGTATAACAAGACATCCATAATGCCCTGTGCCTCTAATAGTCCCACACATCAGGCTCTGGTGGCTCCATGATCATTAGGGCCTTTAAAAATTAATAGCATGCATATGTATATAAGCTATGTAGATAAGTTGAGGGTTTTATTTTCAAACTATAGCATATTTTTAACATACCATCACCAATAAGAATGATACACTCACTGTGTGCTTGGCCTAACCGCTTTCCTCTTTTAAAATGGGAGTTTTGCCTGCATGCATGAGTATGTAGTATGAGCATGTATAGTGCCCACGGAGGATATCAGACCTCTGGAACTGGAGTTACATACAGAGTTGTGAATTGCCTTGTGGGTGCTGGAAATTGAACCTGGGGCTTCTGGAAGAGTGGCCAGTGTTCTTAACTGCTGAGTCATCTCTCCAGCCCCTGAGTTTCAAAACTAATATTTTTGTTCATTCTTTGAGAACTTCTTACATGCACATACAGTCTATTTTGTGCCTATTCTCTCTCTCTCCCCTTCTCCCTCCCCCTCTCTCTCTCCCCTCCCCTCTCCCCCCTTCTCCCTCTGCCCCCCACCACACATACACACACAGAGCTTGTCCCAGATCCACCTCTGGCTCCTCGGAACTTCTTGTGTTCTTTATATTTTAACAACTTCCCGAATCCAGTGTGTGCTGTTCATAGGTGTGGGGCTATCCACTGCAGCTTGGTCTACCCACTAGGGGCTACACCCCTAAAGAAAACTAGGAGCCATACACTCTTTATAGCTCTTGAGCTATGTGCCCCTCCCCCTACAAGCTGGTGCTTACTGGCTTTGTCCTGTGCAGCACCTGCTGCGCCCCCCCCCCTCACTTGCAGTCCCCAGGAGCTAACTGTGGGGGCCCAAGAGAATTGCATAACTGGTTGTAGGCAGAGTAGGGGGTTGTAGGTAGCCCTGTTCTCTTGTGTCTCAGAATGATAGTGGCCTCTGGGTGAACTTGCCCGTGTCAGTTCCTTCTTCCCTGGAGGGAGAGAAAACAGCACCTGAGGCAAAAGCAAGGAATGAAGGATGCAGGAAGAGGATGTGGGGCCACTGGGTGGAGGAGGGCATGGAGTTAAGCCAGAGGTATCGCCTGGAGTCAGGGTGACAGGTGACAGACCACATAAAGACTTTAGATTTTGGTCTTTGTTTTTGTTTTGTTTTGTTCTTTAATCAATCCAGACTTCATGCTCAGGTCTCCACGGTTCTGTGCTGATCCATGCCGACCTGACTGAGTGCCTCTTTTTCTTCTCTTCATTTCCCCTTCTGTTGTACCGTGGTTCTAACCCCCTTTGGGTTGAGCAGACCTTTCACAGAAGTCCCCTAAGACCATCATAGAACATAGATATTTACATTACCATTCATAACAGTAGTAAAATCTCAGTTAAGAAGTAGCAATGAAAATAATTCTATGGTTTGGGGCCACCACAACATGAGGAACTGTATTAAAAGGTCGAAGTTTTAGGAAGGCTGAGACACTGCTGCCCTGGCCAGTTCCCCACCTAATTTGCACCGAGTACTTTCTATGCTTTCTGTTAGGAGGGACTCCTCTACCTGTCTGTGTCTGACTGTCTATTGGGTCTTGGCTCTGTTCTGCCATACTATAAAAAGGAGAGTTCTTGAGTGTCTCTCTCGATACTAATCATAGTCTCCCATTATGCAAGAATTCCTATGTATACCTCTTTGATCCATGCAGTAAAACACAGTGTCTTCATGGGGAGGGGCCTTGTCTTTTCTGCCCCACATCATTGTCTCTGGTGCCCAGAACTGTGCCTGGCATAACATAGTCTTCAACCAGTATTTTTCTGCATGAAGAAATGATCATTATTTTTGTAATGAGCAACATCAAGGACTTATCCAAACCTTACTATAATGGGGAGTCTCCATTTTCCCCAAGCTCCTCTCCCCACTTCCCACCCGCCTCTGGTACCTGGGAGTTGACGATTTGGATTATGTGAGTTTGTAGGAAGAGTGCCCTGCAGCCCTGGGTGCTAGTCTGATTTCCTCAAACTCATCCATGTACCCAGCACTCTCATGGTTCCTGGAACCCGAGGCTGGGAACGTTGCCTACGTGCGGTTTCTGACAGGCCCATTGTTTTACCTGTGGTTTTTCCACTCTTGAAGCCTGTGCCTAGTTCTGAGAAACTTATTGCAGTTCCATGTTGTGTAAGGGTGGACCTGCTGCCCTCCCTGCAGAGTGCAGCGTGGAAGCTGATAGGATTTCCAAAGGCAGACTGTCCAGGAATTTTGTACTGTAGTTCTGTGAATAAGGTATCTGGATTCCTGCCATTTAGAATAATATTTACAGAACTGAAATAAAGAGGAAGGTGTTCATGGCTTAATTCTGCAGGCACCCCCCCCCACCCCCTTTACGGGTCATTTTGTATGGAGCCAAATGCTTTCTATTCTTCCTAACTTATCTGTGTGGCTATTGAACAGCCCTAAACAAATCTTCATGGATGATAGATGGTCTCTAATCTGATACAGATTTTGCTGGTGAACTCTGTTTGTTTGAGCAAGTGGGGTTGGGGTGAGCTTCACAGAATCTCTGAAGTTTGGGGTTGAGATGGTACCATCGTGTCTCACCTCCATCAGATTGGTCAGTGTTAGGGTTCAAAAACTTGTGCAGATCTTGCTAATTATGCTTAAAAAAACCCATAGGGACCAGGAAGTAGTTGTGTGGTTTTGAGACGTTAGGTCTGGCCTTTACCTGAGTTGTCTTAGTTAGGGTTTCCATTCCTGTGAGCAGACACAGGCCAAGGACGACATTTACTTCGGGCTCGCTTACAGGTTCAGAGGTTCAGTCCGTTATCATCGATGGGGGAACACGGCAGCATCCAGGCAACATGGTATAGGAGGAGCTGAGAGCTCTACATCTTGTTCTGAGGCAAACAGGAGAAGATTGGCTTCCAGGGAGCTAGGATCAGGGTCTTAAATCCCATGCCTACAGTGATGCAAATACTCCAAGAAGGCCACACTTCCTAATAGTGCCACTCCCTGGGCCAAGCATCTACAAACCATTGTAGCAGCTAATAAAGTATATCACTTCTAACAAAGTACTTACTCAAAAGAAACAATGAAAAAAACCCCCACAGTTTGGGAATTTAAGTGACACTATGACCTGTTCCATTTCTGCTGTGCCAGATTTGGGACCTCCTACGAGCCTCTGATTCCTAAATGGAACAGATACTTCAAGGCTGTCTTCAGTGACATAGTGAATCACTTCTATGTGCTAAGCATTGTACAGGTTTCAAAGTGCAGTGATGACATTGGACATATGATACATAATCAACATGATCTGGCAGGGCTAAAAATATGTTCTATTGGTGATACCTAGTGAATGTGTGGTTTATTCCATTAATAACTGAGAAAGGACTCTGCTATAATAAGCCTGTTGGCCCTGTTCTTTTTTCTGTTGTGTCAGTGCACACTGGTGCCACTAGATGGACTTCACAACTAATGGACATCTTGTCTCTTGTAGTGGCCAACAGACCTGTGATCACCTTCATGAACTTCACTGGGCTGGGTACCACACTCACGTTATACTAACCCTTGTGTACCGTGTATTTTTTATCTTCTCTCTGCCTTCCTTTTTCCTGTCTCTCTTCCTGCACATTGCCAGCACTCACCCCCATTTTCCATTTCCTGTGGCTTACAG
Seq C2 exon
ATAATCATGATGCGGTCCTGAGGTTTAATGGGGCACCTACAGACAACTTCCAACAGGATGTGGGCACAAAAACTACCATCCGCCTAGTGAACTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022885:ENSMUST00000023601:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=PU(27.8=36.5)
A:
NA
C2:
PF0077713=Glyco_transf_29=FE(12.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types