HsaINT0163603 @ hg19
Intron Retention
Gene
ENSG00000115183 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:29364]
Coordinates
chr2:160031464-160033029:+
Coord C1 exon
chr2:160031464-160031695
Coord A exon
chr2:160031696-160032862
Coord C2 exon
chr2:160032863-160033029
Length
1167 bp
Sequences
Splice sites
5' ss Seq
ATGGTACTT
5' ss Score
5.19
3' ss Seq
AAAATTATTTTATCCTGTAGAGC
3' ss Score
6.96
Exon sequences
Seq C1 exon
GTGGTGGCCTACCACTACTGCCAGGCTGACAACACGTACACTTGCCTGGTGCCCGAGTTTGTGCACAGCATCGCAGCTTTGCTCTGCCGGTCCCATCAGCTGGCCGCCTACAGAGACCTTCTGATAAAGGAGCCCCAACTACAGAGCATGCTGAGCCTCCGATCCTGTGTGCAGGACCCGGTGGCAGCTTTCAAGAGGGGAGTGCTGGAGCCACTCACAAACCTGAGAAATG
Seq A exon
GTACTTCGCAGCAGCTACCCACAGCCCCATCTCAGTAGTGGTACAGCAGACACAGGTGGTCCCCAGAAGGCAGGTGGTCAGCCGGGCTGGGGTAGAAGTGAGGTGGAGCATGGAGAGGATGTCGAAGCCTCCGTGCCCATCCACTCCTCTTTCTCAGAACCAGCCCCATGAGGTCGCTCCTACACCACCCCTATGGTATAGTGTTAAAAGAAGCACCCTGATAAGAATGAATGTGATGACTGAGCAGTTCCAAAGTAGTCAGCTTGTAAGTGTGGGCTGTTTAGGTGACTTGCACCACAGAAGACTGTTGCGTATTTTGCACTCCTAAGTATCTGAGGGAATAAGTGGATTATTTGGAGGAATTTTCCAGCATATATATTTGTCAGGGCCTCTGCTCAGTTGAATTGAAACCTTAAAGTGACTTCTAAAGGTTTCCATTTTAATTGTTTGTCCCCGACAAGGTAATGGACATCAGTGACCTGATGGGCCCTTCAGTTTCCCATCCTCTCTGCCCTGGACTCCTCACCTTTTGAGCTTGTTTACTTGCCCACATGGCACCTCTGCTGGAAGGTGCTAGAGGGATAGAAAACAGATATGTCATCATTTCTTCTCTATTGCCTGGGCAGAAAATCAGCACTAATAAATAGAAAACCAGATTCAGGCTCGCAGAGAAGAGCCCTGTTGGAGGAGTCGGTAGCGTGGAGCTCTCACGCTGTGTTGGTTGTATGGCTTGGCCAGGGCAGTTTGCCCTGGGCTGGGGGCAGCGAGGGGGTCAGTTTCCCTTCCCTGGAATCCACTGGGGAGCTCTCATGGGGGGACCTAGTGACCTTTCCGGATTGGGCCTCTGTATGTGTTCATTATCTTTGTGTAGCCCACCCCAATGACAGTGGTTTATGAAGAGCTAACTGTGTTATATACACGAGTGAGATTCTGCTAACATGTGTCATGCAATATGTTTGTTTTGTGAGAATTGGTTTTCTTTTGGCTCTGTGCTCCAGTTTTCATTATAAATTTAATAGAAAATATGCTTCTGTGAAAACTGTTTCTTGTGCCATATGTAAACCTTTTTAGTTTCTAACACTAAACTGGGCACTAAAATACACTGGGTGTTGCTGTCTTAGAGAAATGTATAATTTCTTAATTTGAAAAAATTATTTTATCCTGTAG
Seq C2 exon
AGCAGAAAATTCCTGAAGAAGAATACATTATTTTGATAGATGGCTTAAATGAAGCTGAGTTTCATAAACCTGATTATGGAGATACGCTTTCTTCATTTATTACCAAAATTATTTCTAAATTTCCTGCCTGGTTGAAGTTGATTGTGACTGTAAGAGCAAATTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115183-TANC1:NM_033394:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACGTACACTTGCCTGGTG
R:
TCAACTTCAACCAGGCAGGAA
Band lengths:
343-1510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)