MmuINT0156834 @ mm10
Intron Retention
Gene
ENSMUSG00000035168 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:MGI Symbol;Acc:MGI:1914110]
Coordinates
chr2:59795795-59797752:+
Coord C1 exon
chr2:59795795-59796026
Coord A exon
chr2:59796027-59797585
Coord C2 exon
chr2:59797586-59797752
Length
1559 bp
Sequences
Splice sites
5' ss Seq
ACGGTACCT
5' ss Score
6.79
3' ss Seq
AAAATTATTTCATCTTTTAGAGC
3' ss Score
7.58
Exon sequences
Seq C1 exon
GTGGTGGCCTACCATTACTGCCAGGCTGACAACACTTACACATGTCTGGTACCTGAGTTTGTGCACAGCATTGCTGCTTTGCTGTGCCGGTCCCACCAGCTGGCTGCCTACAGAGACCTTCTGATCAAGGAACCCCAGCTGCAGAGCATGCTGAGCCTCCGCTCCTGTGTGCAGGATCCCGTGGCTGCTTTCAAGAGGGGCGTCCTGGAGCCACTTACAAGCCTAAGAAACG
Seq A exon
GTACCTACCAGAAGCCTTGGGGTGCTTCCCAGTAAAGGCCGATGCCCAAGTGGTCCTCAGAAGGGTGGTCAGCTTAGCCCTGGGGTGACTCAATACACATCTGATCCCACCACATCCGTCCGCTGGGGGCGGCATTTCCAGTGCAACGTCTCTTGTGTGGATGAAATCGGCAACCGAGCAGTTCTAAGTAAGCCTTGGAACTATAGGGAACTGTAGGGAAGAGTAGACTTACTGTCCTACAAAGGTTTGACTCTTGGTCTACGAAATGAGCCAATGGTAGACATAACAGAGCCAGGAGAGCTTATTAATCATGTACTGTACCTCCAGTACATGATTATGGATGGTTACTAAGAAGAGAGCTTTAAGGCTCTACCTTCTGAAGGATCCTCAATAAAGGGCAGTAACTTTTGGGAGTGGTAAGATGTCAAAACAAAACAGCAACAGCTTGGGCCTTCAGAGGCAGGACACTGGGAAGATGAATCCACGGGAAGATTAATGCTAGTTGCAAGGAGTTCGTAAGCTTTGATACCCAGACTTCTCTGCTTCTCCAGTGCCCCGGACCCGCACTCTTCTTCCCTTCTCCTGGCTGTAAGCTAAAAGGGTGGGCAAGGGGCTGCCCAAACGTCCTTCCTTGTTTTTTCCATCACAGTTGTCCACATTTCAAAGAGGCATAATCTGGTCTCCCCCATGACAGTAACCCGTGTAGGTAATGCACACAGTGAAGAGTCTACACTCCAGGCCTCGGAGGAAACAGTGCAATGTTAGGAATCTTCCAACGTGTTCTCCCACCACACCCCATCCCCCAGCCCCCGATTAGATGAGTTGAAATCTAAACCTAATACTGTTTCTAGGAGTTTACATTTAGTTTTTCCTCCCCACCCCCACCCCTCACTTTCCCCTTCCCAAGTAGGATTGTCAGTGGCATCATTGATCCATAAGGCCTCCATCCCTTACCCTGCTCCTTTTTTGAGTTACCCGTCTACAAAGCATCTTCTGCTAAAAGATACTGAAAAAGAGCCTGAAATGACTGTCATGCTTGCTCTGTGTCCTGAGCAGAAGAAAGCTGTTGCTGTAAATAGAAAACTAGCTTTAGGCTGCTGTATGAAGGACCTGCTCTGGGCATCTGTGAAGCAGCACTTCACCCCTGAGAGAGTCCAACCACACAGTCTTGGTGATAGTGGGGGAGCGTTGGGTTCCAGCAAAGGGCCTGGTGTCTCTTCAGGTTTAGGCGATCTGCATGTCAGTGACTTTGGCTGCAGGCTACCCAGGTTTATGAAGGACTAACCATATTATATATAAGATTGAGATTCTGCTAATGTCTGTAATGCAATATGTTTCTGAAAACTGTTTTGTAAGAATTGATTTTATTTTGGCTCAGTTCTCTGTTTTTCATTATAAATTTAATAGAAAATATGCTTTGTTGAAAACATGTCTCCTGCCATATGTAAACCTTTTTAGGTTTTGCTAACACTTTAAGCTATGTGTTAAAATGCACTGGGTGGTGCCATGTTATAGAAACGTATAATTTCTTAATATGGAAAAATTATTTCATCTTTTAG
Seq C2 exon
AGCAAAAAATTCCAGAAGAGGAGTATATCATCCTTATAGATGGCTTGAATGAAGCTGAGTTTCATAAGCCTGATTACGGAGATACGCTGTCTTCGTTTATTACCAAAATTATTCCTAAGTTCCCCACCTGGCTGAAGTTGATCGTGACCGTGAGAGCAAATTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035168:ENSMUST00000112568:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGGCTGACAACACTTACA
R:
GATCAACTTCAGCCAGGTGGG
Band lengths:
356-1915
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types