RnoINT0147511 @ rn6
Intron Retention
Gene
ENSRNOG00000025394 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:RGD Symbol;Acc:1302949]
Coordinates
chr3:45868297-45870299:+
Coord C1 exon
chr3:45868297-45868528
Coord A exon
chr3:45868529-45870132
Coord C2 exon
chr3:45870133-45870299
Length
1604 bp
Sequences
Splice sites
5' ss Seq
ACGGTACCA
5' ss Score
5.45
3' ss Seq
AAAATCATTTCATCTTTCAGAGC
3' ss Score
8.48
Exon sequences
Seq C1 exon
GTGGTGGCCTACCATTACTGCCAGGCAGACAACACGTACACGTGTCTGGTACCTGAGTTTGTGCACAGCATTGCAGCTTTGCTGTGCCGGTCCCACCAGCTGGCTGCCTACCGAGACCTTCTGATCAGGGAGCCCCAGCTACAGAGCATGCTGAACCTCCGCTCCTGTGTGCAGGATCCTGTGGCTGCTTTCAAGAGGGGCATCCTGGAGCCACTTACAAACCTAAGAAACG
Seq A exon
GTACCATCCAGAAGCCTTGTGGTTACTCCCCAGTAACGACAGATGCCCAAGTGGTCCCCAGAAGGGTGGTCAGCTTAGCCCCGGGAGGGGGGGTGACAGGCACAGGATGTGGATGACTCGATACAATATCTGATGCCACTACCTCTGTCTTCTGGGGCATCGTTTCTAATGCAGCATCTCTGGTGTAGATGAAATCAACAGCTGAGCAGTTCTAGGGAAGCCCTGTGACTGTCGGGAAGAGTAGGCTTACTGTCCCACAAAGATGTGATACTTGGTCTGTGAGATGAGCTCTGTAGGCAGCGCTGAGAGAGCTTATTAATACATACCCACAGCGCATGGCTGTGAATGGCTACTGAGAGCAGGGCTTTAAGGCTCATCTTCTGAAGGATCTTTTAGAAGTAGTAAGATGTCAAAACAAAACAGGAAACAGCTTGGGCCTTCAGAGGCAGGGAACTGGGAAGATGAGTCCGTGGGAAGATTAATGCTTGTTGTAAGTAGTTGGTGAGCTTTGATACCCAGACTTCTCCGCTTCTCCAGAGGTTGGGACCCTGCCCTCTGCTTCCCTTTTCCTGGTAGAAAGTCTTCTCCTGGCTGTAAGCTAAAAGGGTGGGCAGGGGGCTGCCCGGAATTACTTCCTTGTTTTCTCCATCACAGTTGTCCAGATTTCGAGGAGGCACATAACAGTGCTCCGTGTAGGTAAAACACACACTGAAGAGCGTCTACACTCCAGGCCGCAGTGAAACCAGTGCATTGTTGGGAATCTTCCAATATGTTCCCCTCCCCCCACAACCCCTAATTAGATGAGTTGAGATCTATATCTAATACCATTTCTAGGAGTTTTCATTTAGTTCCCCCCCCCCCCCCCCGCCTTCCCCTTCTCAGGTAGGATTGTCAGTGACATCATTGATCCTCCAGGTTTCCATCCCTTACCTTCCTCCTTTTTGAGTTACCCATCTACAAAGCATCTTCTGCTAGAAGATACTGGAAAGAGGGTCTGAAATGGCTGTGTCATGCTCTCTCTGTACCCTGAGCAGGAAGCTGTTGCTAGTAAAACAGAAAACCAGCTTTAGGCTGCTGTGCAAAGGACCTGCCCTGGGCATCCGTGAAGCAGCACTTTCACTGCCCAGAGATTCTGGCCACACAGCCCTTGGTGGTGCCATGGGGAACTCCTGGTCCTCGGATTTCGGAGTCAGGCAGCTGAGGGGTTCCAGCAGTGGGCCAGGTGTCTGCTCCAGGTTTAGGCGGTCTGCATGTCAGTGACTTTGGCTGCAGGTTACCGGGTTTGTGAAGAACTAACTGCATTCTACATGAGCCTGGGATGCAGAACTAACTGTGTAAGACTGAGCTCTGTGCTGATGTCTGTAATGCAGCATGTTTCTGAGAACTGTTTTGTAAGACTTGGTTTTCTTTTGGCTCGGCGCTCTGTTTTCCATTATAAATTTAATAGGAAATATGGTTCGTTGAAAAACGTGTCTCCTGCCATATGTAAACCTTTTTGAGGTTTTGCTAACACTTTTAAGCTGCATGTTAAGATGCACTGGGTGGCGCCATGTGACAGAAACGTATCATTTCTTAATTTGCTTAAAAATCATTTCATCTTTCAG
Seq C2 exon
AGCAGAAAATTCCAGAAGAGGAATACATCATCTTGATAGATGGCTTGAATGAAGCCGAATTTCATAAGCCTGATTACGGGGACACGCTGTCTTCATTCATTACCAAAATCATTCCTAAGTTCCCCCCCTGGCTGAAGTTGATCGTGACCGTGAGAGCAGATTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025394:ENSRNOT00000038983:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACGTGTCTGGTACCTGAGT
R:
ACGGTCACGATCAACTTCAGC
Band lengths:
346-1950
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]