GgaINT0046909 @ galGal3
Intron Retention
Gene
ENSGALG00000012570 | TANC1
Description
NA
Coordinates
chr7:38144938-38146692:+
Coord C1 exon
chr7:38144938-38145169
Coord A exon
chr7:38145170-38146525
Coord C2 exon
chr7:38146526-38146692
Length
1356 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
ATGTAAATTTTGTATTTCAGAGC
3' ss Score
8.61
Exon sequences
Seq C1 exon
GTTGTTGCTTATCACTATTGTCAAGCTGACAACACATACACTTGTCTTGTCCCAGAATTTGTGCACAGCATTGCAGCTTTGCTTTGTCGTTCGAGTCAATTAACAGCATACAAAGATCTTCTAATAAAAGAGCCTCATTTACAAAGCATGCTTAGCCTGAGATCTTGTGTCCAAGATCCAGCAGCAGCTTTTAAAAGGGGAGTGTTGGAACCACTTTCAAACCTCAGGAAAG
Seq A exon
GTAAATCAAGCAGAAGTGACTTGGAAGCTGAATCTAAGCTGTATAAAAAGTGGGGAAAAAAATAAAAATGGAAGCCTTCGAAAATGTCTGTTCTAATGCCAAAAGAGAAATAGGTAAAGCAGAATGTTCCTGAGGAAAGGATTCTTTAACTCGTAGTTGTCTGTAACAATTATAGGTAGTTGTTTTGTATTTTGAAGTCAAATTCTATGAAGCATCCAAAATCACATAAGCGTTATGTTTGTTTCTTGCCAGAAAACTCAAGGATAGCTGTTCAGCTTGAAATTAAGGCTCACACATTTCATATTAAAGGATTTTGTTTTCAGATGCTCCTGGCTTTAGTCACACTTTTTCTGTTTAGTAGTTTTCTGTGCCTGAAGACTTGAAAGGTGGATGCGGTTATTGCTTACTTTTAAAAATCAAAGTATGATATGACAGTTTTCCAAGGAAACATGTAACAACATGATGTTGTGTTTAAAAAAAATAAATCCTGCAGAATCTGCCTTTAGATGGCCTTGCAGTCTGTATGCCACCTTGAGCGGGTACTCAATATATGGTTAGATGAGGGAGGTTTGTCTGGACAGAGTACGTGTTGTTCCTCTGAAAATCAAACTGCAGTTCCTGAGTTGTTATTTTGGTTTTTTTTTTTTTTGTCTGTTAACAAATGTATGTGATACTCATTGGCAGATCTGATGTTTGTCCCTGGAACATTCATTCTTAACCAGAATGAACAGCGTTACTTTATTAAGCAGTTACAAAGTAGTGTTCTCAGTTTTGAAAGTGCAAACAAATGCTTTTATGATTTTTACAAGTTGTATGTTTTTCTTGGTTTGGTAAGTTCAGTGAAACATAACTTTTAAGTAAATGGTTAAAACTTATGTCAATTAATAGCTTAAGCAGCTTGCATGTGCATTCTTCCACTATTGTGCATCTCTTCTCTGTTACAGGCTAACAGCCTTGTTTAATCATTAAACTCTTTTCAAATCAGCTGTGAAATAGGTCCATCATAAATAGCACAGTCAAAACCTCTGTACTGTGATTGCTTGTGTTTATTTTTTTTAGCACTCAATGGCAGTGTTGTTTTATAGTTAGGAGATCTGAAAACCAAAACTATTAATTGTTTTTGTTGTCTGCAGAGTATCATTAAGTATAACAGATAGGTTGGCTGAAGTGGTAGTTGTTCTGTTTTTCAGCAGTTAAAACATTTAATCTGTAAAATAATGCTTAAATGCCATAAAGTGAACTGCTAGGCAGAACAATGCATTTTTATTCCCTGGCATTTAAAATTTGAGAATAAAATGCTGCATAGTAGGAGAATTTATTCCCACCTTTCCTTTTTATGTAAATTTTGTATTTCAG
Seq C2 exon
AGCAGAAAATTCCCGAGGAAGAATACATAATTTTGATCGATGGTCTAAATGATGCTGAATTCCATAAACCTGATTATGGTGACACAATTTCGTCATTTCTTGCAAAGATAATTTGTAAGTTTCCTCCCTGGCTGAAGCTCATTGTGACTGTGAGAACTAATTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012570:ENSGALT00000020527:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACATACACTTGTCTTGTCCCA
R:
CAATGAGCTTCAGCCAGGGAG
Band lengths:
345-1701
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]