HsaINT0164008 @ hg19
Intron Retention
Gene
ENSG00000132405 | TBC1D14
Description
TBC1 domain family, member 14 [Source:HGNC Symbol;Acc:29246]
Coordinates
chr4:7000812-7002978:+
Coord C1 exon
chr4:7000812-7000929
Coord A exon
chr4:7000930-7002871
Coord C2 exon
chr4:7002872-7002978
Length
1942 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGA
5' ss Score
5.55
3' ss Seq
CTGCTTCTGTTTTTGTCCAGGTG
3' ss Score
10.6
Exon sequences
Seq C1 exon
AGCTGAAAGAAGCCCAGCGAAGGAAGAAGCAGCTGGAAGAAAGATGCAGAGTCGAGGAAAGCATTGGAAACGCTGTGCTCACCTGGAATAATGAGATCTTACCTAACTGGGAAACAAT
Seq A exon
GTAAGATGTGGCTCTGGGTGTGGCTGAACTGCAGAGCATGTCTTTCTAGAATCTGTGGGCCACAGCTGTAGTCGTCATAGCCAGCAGTGACACCCTGGATGCAGCGAGTTGAAGTTGCATCATCTTCCTTCCCTCTACCCTGGCTCAGCCTGCGCCATCCCTTGCTTGGAGACTGTGATAGCCCCTTCCCCTCCCTTCCAGTTCACCTTCTTCTCATCTCCTGAGCCAGCTTCTAAAGCATGAGTCAGTGTCCCCTCCCTTACCTAGAATTTCAGTAACTTCCTGTGACTGTCAGTACACAGTTTGAACCCTTAGCAGGCAACACCCTTAGTGAGGTGGCCTGCCTTCCTCGGCAGCCTCACCCTCGGATGCCTCTCCTCCACTTGGACAGAGCCCTCTCCCTAGGGAGCCCCCCATAGGTGTTGCTCCTTTTAAACCTGGGGCCTCGCATGTTCCAGGCCCTGTGTCTGGAGTGCTCTTGTCCTGTACTTCCTCAGCCAGCAAACTCCTGTGTGCTCTCCAAAGCTCAGGGAAGACTTTGCTGCCCCTACCCTGGCTCTAGGGCCCTGTGGTTCTGTGTGCACACAGCTGTCTGTTCAGGCCTCTGTCTTCCTCTCTTTGAGGATAGTGACCCCAGTGTCCAGTAGAGTGCACCTGGCAGAGTCTGGCAGCTGCTGCCCTCTTTACATCTGAGGGGCAGCTGTGGGTCTTGTTTTTATTCTCGTGTTCAGAACGGTGGGGGCCAGTGTGCGGGCAGAAGTCCCAAGGCTGCGCACAGAGGCATTCGGGGAGCTTGGATGCCAGCTTCCCTTCTGCTCTCGTCCCACATGTCAGCACTGCAGGGGTCACGCGGCCCTGCTCAGGGTCTCCACTAGGAAAATATGCTCAGAGCATGCTTTTTAAGGCAGTATCCTCAAAAGGCTGGATGCTGTCAGGAAACACTTTATACCTGTTCTCGCATGGGATCTAGTAACAAGGACAGAGGTTCTCAGAATGCTTGCTGCTCCCACCGAGGGAGACCACTCTGGTCTGTCCTGCAGGGCCGTGGGTTGGATGTGGTCTGAATGCATTGCATGCAGACCCACAGCAGTTCCCGTCGACTGCACACGGACGCTGCCTGGCACTGTTCTCCGTGCTTTTGTACTTTATCTCACTTCATCCTCACAGTGGCCCTTGGGTGTAGGTTTCATCGTCTTGACTTTCGAGAGGATGGTATAGGTTCAGAGAGGAGAGATCATTTGTCCGGATTCCACAGGTAAGGATGGAGTTAGGATGCAGCCTGCTTTCTGCAGCCTCAAGCCTGTGCTCCCCACGATGCTGCGTTCAGAGGCACCACGGGGGCCTGGTTTGCCCAGGCTGTTGGCAGTGTGTGTTCCGTGTCCCAGCAGAGCTGAAGGACTCTGTACAGCCTACAATGTTCTGAGTCAGCAGTTCTTCTCCGCAGTTAGAACTTGCCAGCTCACATCTGGGCGCTGGGCCTGTATTGGTGGTGCGATGGCCGTCTGCTGACTCTCTGCTGGGGTCTGCTTCTGTCTCCAGTGCTGCTGCAGTGCCGCCTGGCACTCCTCACCCACTCCCAGCTATGTGCTGTTCCTGTAGGAGGCCAAGCCATTGCTTTTTCCTGTGTTTTCTGCTCAGAAAGTCCTCCCCATCCTTCATGTGCTCAGGTCATTCAGAACTTGGCCCCAGAGCGTGCCTGGGCCTCTGGTTCGTGGTGACCTACGCTATGCTGTGCTCCTCCATACCTGCCACGGCAGCTGCCAGTGGAAGGGGATTGTTGATTTGATCTTTACAGAGCCCTGGACTCTAAGCTTCCTGAGGGCAGGGGCTGTGCCTGATGCAACGGTGCATCCCAGCTCTTGGTGGTTCGGGGCTAGGCACGCAGGTAGACAAATGTCTTTGTGTGGAACAAACTCAAACTCCTGCTTCTGTTTTTGTCCAG
Seq C2 exon
GTGGTGCTCTAGAAAAGTTCGAGATTTATGGTGGCAGGGAATCCCTCCAAGTGTGAGAGGCAAAGTCTGGAGCTTAGCCATTGGCAACGAGTTAAATATCACCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132405-TBC1D14:NM_020773:6
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.193 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF085986=Sds3=PD(38.6=85.0)
A:
NA
C2:
PF0056613=RabGAP-TBC=PU(23.0=54.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAAGAAGCCCAGCGAAGG
R:
CGTGGGTGATATTTAACTCGTTGC
Band lengths:
223-2165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)