MmuINT0157279 @ mm9
Intron Retention
Gene
ENSMUSG00000029192 | Tbc1d14
Description
TBC1 domain family, member 14 [Source:MGI Symbol;Acc:MGI:1098708]
Coordinates
chr5:36861922-36863210:-
Coord C1 exon
chr5:36863093-36863210
Coord A exon
chr5:36862029-36863092
Coord C2 exon
chr5:36861922-36862028
Length
1064 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGC
5' ss Score
5.61
3' ss Seq
CATGCTTCCATTCTGTTCAGGTG
3' ss Score
10.28
Exon sequences
Seq C1 exon
AGCTTAAAGAAGCCCAGCGTCGGAGGAAGCAGCTGGAGGAAAGGTGCAAGGTTGAAGAGAGCATTGGGAACGCTGTCCTCACCTGGAACAATGAGATCTTGCCTAACTGGGAAACCAT
Seq A exon
GTAAGCACTGCCTCACTGGAGCTACTTAGTGTGACCACTCCGTTCTGGAGTCTGTGGGCAGAAGCTGGAGTTGCTGGATATGGTGATAGCCTCTTCCAGTTTATATTTTGAGGGCCTGAGCCATGTTTGTAAAGCTTATGCCTGTGTCACTCCATACTTAAAATTTTGGTAGCTTGTTGTGAGTCTCCATATGAAACTGAGTGTGAGATGGCCTGCCCTGTCTCTGCAGACTGTTCCCAGGATTACCCAGTAGGAACTGCTAATCTGTAACCTCTGGACCTTTGCCTGCCTTCTCCCTGTCTACAGTGTCCTGAACCTCTTCAGCCTTCTAGATCCTGTTTCCTCTGGCTTAGTCTTCACAGGGAAGAATTTCCTGCCCCCACCTGTGGAAGACTCCCTTGAGTCTCATGGCACTGTCTGTTTGAGCATCTGTCTCTTTCTGAGGGTGGGAACCACTTGTCTTTGATGTCAACCTGCAGTGTCAGTACAAAGTGGCACCCCACAGTGCCTGGCAGCTGTGGCGTCCTCAGTTCTGAGGATCTGCTGTACATCTTGTTTTCTTCCTGCGTGGCCAGTACAGGCAGGGTCATTGTGATCAACACAGTTGTAGCATCCTGTCTACAGTGGTGTGTGGCTGCCCTATGAGGCCTCTTCCAACTACATTTCTGTGGAAGAGAACTGCCTGCACGCCTCCCCTGTGCCCTGCACGCCTCCCCTGTGCCCTGGGCCCCTTACCTGTGCACAGCTCTTTGCAGTCCTGTAGGAGTCCACTCTGTTTCCCCTGTCTGTGTTTTCTGTTCAGAGAATCTTTTCAATTCTTCATGTATGTAAATTCCTACTAATCAATCAGAACCTGGTTCTGGAAGGTCTCTTGGTCCTTCCGTCTGTGGTGTTCCATGCTATGCCTTCAGTACCTGTCGCAGCCGTAGAAGTAGTGTCAATTTCAGTAGAGTCAGGAGGGTAAGCTCCCTGAGGGGAAGGGGAAGTAGGGGTGAGGCTTGTGTGCAGGCGAGCCTTCCTCCATTGAGAACAAACTTAGAAACTCATGCTTCCATTCTGTTCAG
Seq C2 exon
GTGGTGCTCTAAGAAGGTTCGAGACTTGTGGTGGCAGGGAATCCCTCCGAGTGTAAGAGGCAAAGTTTGGAGCTTGGCCATTGGCAACGAGTTGAACATCACTCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029192-Tbc1d14:NM_133910:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.189 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF085986=Sds3=PD(40.0=90.0)
A:
NA
C2:
PF0056613=RabGAP-TBC=PU(24.7=54.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTAAAGAAGCCCAGCGTCGG
R:
CGTGAGTGATGTTCAACTCGT
Band lengths:
223-1287
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: