RnoINT0147945 @ rn6
Intron Retention
Gene
ENSRNOG00000006400 | Tbc1d14
Description
TBC1 domain family, member 14 [Source:RGD Symbol;Acc:1309993]
Coordinates
chr14:79412227-79413573:+
Coord C1 exon
chr14:79412227-79412344
Coord A exon
chr14:79412345-79413466
Coord C2 exon
chr14:79413467-79413573
Length
1122 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGC
5' ss Score
5.61
3' ss Seq
CTCGCTTCCATTCTGTTCAGGTG
3' ss Score
9.71
Exon sequences
Seq C1 exon
AGCTTAAAGAAGCCCAGCGGCGGAAGAAACAGCTGGAGGAAAGGTGCAAGGTTGAAGAGAGCATTGGAAACGCCGTCCTCACCTGGAATAATGAGATCTTGCCTAACTGGGAAACCAT
Seq A exon
GTAAGCATTGCTTCACTGGTGCTGTGTGACCACTCCTTTCTGGAGTCTGTGGGCAGTAGCTGTAGTTGCTGGATATGGTGACAGCCTCTCCCAGTTTATCTTTTGAGAGCCTGAGCCATGTTTGTAAAGCTTATGCCTATGTCACTCCATACTTAAAGTTTTGGTAGCTTGTTGTGAGTCAGTCTCCATATGAAATTGATCTCTGTACCCGAAGGGACAGGCTTCTGTGTGAGGTGGCCTGCCCTGTCTCTGCAGACTGTTCCTAAGATTACTCAGTAGGAGCTGCTAATCTGTAACCTCGGGATCTTTGCCTGCCCTTTCCCTGTCTACAGTGTCCTGAACCTTTTCCTCCTCCTAAATCCTGTTTTTTTCTGGCTTAGTCTTCACAGGGAAGAATTTCCTGCCCCCACCTGTGGAAGACTCCCTTGAGTCTCCTGGCACTGTCTGCTTGAGCATCTGTCTCTTTCTGAGGGTGGAAACCACTTGTCTTTGATGTCAACCTGCAGTGTCAGTACAGAGTGGCACCCCACAGTGCCTGGCAGCTGTGGCATCCTCAGTTCTGAGGATCTGCTGTACATCTTGTTTTCTTCCTGTGTGGCCAGTACGGGCAGGGTCATTGTGACCAGCAGTCTTGAATGACTGTGTTGTTTAGATGCTCCCCAGTTAGCATCCTGTCTGCAGTGTGTGGTAGTGTGTGGCTGCCCTTTGAGGCCCCTTCCCACTACATTTCTGTAGAAGAGCACGGCCTGCATGCCTCCCCTGAGCCCAGCACGCCTGACCTAAGCCCTGTGCTGCTCGCCTGTGCACAGCTCTTTGCAGTCCTGTAGGAGTCCACTCTGTTTCCCCTGTCTGTGTTTTCTGCTCAGAAAGTCTTTTCAGTTCTTCATGTGTGTAAACTTCTACTAATCAATCAAAACCTGGTTCTGGAAGGTTTCTTGTTCTTTGGTCTGTGGTGTTCCGTGCTGTGCCTTCAGTACCTGTCACAGCAGTATTGTCTGGATGTCAGTAGTCAGGAGGGTAAGCTCCCTGAGGGAAAAGGGTAAGTGGGGGTGAGGCTTGTGTGCAGCTGAGCCTTCCTCCATTGAGAGCAAACTTAGAAACTCTCGCTTCCATTCTGTTCAG
Seq C2 exon
GTGGTGCTCTAAGAAGGTTCGAGACTTGTGGTGGCAGGGAATCCCTCCGAGTGTAAGAGGCAAAGTTTGGAGCTTGGCCATTGGCAACGAGCTGAACATCACTCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006400:ENSRNOT00000058414:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.275 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0056613=RabGAP-TBC=PU(8.8=54.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGAAGAAACAGCTGGAGG
R:
CGTGAGTGATGTTCAGCTCGT
Band lengths:
206-1328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]