HsaINT0166132 @ hg19
Intron Retention
Gene
ENSG00000198176 | TFDP1
Description
transcription factor Dp-1 [Source:HGNC Symbol;Acc:11749]
Coordinates
chr13:114290849-114292199:+
Coord C1 exon
chr13:114290849-114291015
Coord A exon
chr13:114291016-114292132
Coord C2 exon
chr13:114292133-114292199
Length
1117 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
TATTTTCTTTCCCTTTTCAGAAA
3' ss Score
12.23
Exon sequences
Seq C1 exon
ATTTGAGTATCTGTTTAATTTTGACAACACATTTGAAATCCACGATGACATAGAAGTGCTGAAGCGGATGGGCATGGCTTGCGGGCTGGAGTCGGGGAGCTGCTCTGCCGAAGACCTTAAAATGGCCAGAAGTCTGGTCCCCAAGGCTCTGGAGCCATACGTGACAG
Seq A exon
GTCAGCAATGCCCAGACAACCTGGCGTGGCTGTGTGAGGAATGGCCCCCAGCCTCCGACGGTGCCCTCCCCTCCCGGCTCGGGATGTGTCTTGCTGAGATCAGGCCCACGTGTGTAGGGCCAGGAGCAAAGACAAAGGGGCTGTGAGGGGGATGAGGGCAGGGGTGTGGCTGGGGTGGGGTCCAGCCAGTGCCGTGACCCACTGGATATGGGGGCCTTGAGTCCACAGGTGGCTCGTGTGGATTTCCTATGTGGTTTGTGTGAGGAGGTGCTAAGTCAGGATTTTACCCTCCAAGTAGGCCCAGAAGTAGAAGTTGAGATTCTTTGAGAAGTGCAGTTGGATTGCTGATCCCACCCACTGATGGTAGCTGATTGGTCACTAGGGCAAAGTCACCAAGAAAAAGCATTTCAGAGTCATTGGCGTCCTGCTCCGGAGGGCCGGGAGCACAGGAGCTTTTGTTGAAGGAGCTTTTTTTCTGTTCTGGTGAATTCTTTCCTTGGGGGCCGTAGGGTCCCAGCCACTGACAGCAGGATGGCTTTAAGGTGAGAAATTGTGAAGGTGTCATATCTGCTGATCCTTCTCTTGTTAGCCTAAACTTGGGGTGTAGATTTATTCCCTGAGAGGGTCAGAGATTCCTCCCTGAGCTCTTAGACTGCCCCAGATCTTGTGAAAATCTGGCTGGTCCATGTTGTCAGGTGACAGTGGGCTCTGGCCGCCCACGTGGGCTGGGCCCTGACCCCGGCCTCTGTCCCGTGCTTCATGGAGCTGCCAGGATGGGCTGTGGGAAGAGGGTTTCAGCTTGACACTTTGATTCGGTTCCGTTTCACGATGGGTATGATACTGAGGCAGCAGCACACGTGTGCCGTTTGTAAGTCAGTGTGTGCAGGTATTTATTGCAAGGCTGTTCTTGCCTTTTTAGAGAAGACAGGCTTATGTGACTGCACAGCGGGATGTCCTGCTCCGTGGCGCAGTGTGGAAAATACTGGACAAGCGAAGGATATCCGGAAGCTTCTACAGCCGTCTGTCCTGTGGAACTGCGCGTCATTTTGTTGGTTGCCTGTGCGTCTTGTGTTGTTTCTGTTTCATGACCATTCGCTTATTTTCTTTCCCTTTTCAG
Seq C2 exon
AAATGGCTCAGGGAACTGTTGGAGGCGTGTTCATCACGACGGCAGGTTCCACGTCTAACGGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198176-TFDP1:NR_026580:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.093
Domain overlap (PFAM):
C1:
PF087815=DP=FE(38.6=100)
A:
NA
C2:
PF087815=DP=PD(5.5=29.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACAACACATTTGAAATCCACGA
R:
CTTGTGCCGTTAGACGTGGAA
Band lengths:
214-1331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)