HsaINT0166132 @ hg38
Intron Retention
Gene
ENSG00000198176 | TFDP1
Description
transcription factor Dp-1 [Source:HGNC Symbol;Acc:HGNC:11749]
Coordinates
chr13:113636534-113637896:+
Coord C1 exon
chr13:113636534-113636700
Coord A exon
chr13:113636701-113637817
Coord C2 exon
chr13:113637818-113637896
Length
1117 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
TATTTTCTTTCCCTTTTCAGAAA
3' ss Score
12.23
Exon sequences
Seq C1 exon
ATTTGAGTATCTGTTTAATTTTGACAACACATTTGAAATCCACGATGACATAGAAGTGCTGAAGCGGATGGGCATGGCTTGCGGGCTGGAGTCGGGGAGCTGCTCTGCCGAAGACCTTAAAATGGCCAGAAGTCTGGTCCCCAAGGCTCTGGAGCCATACGTGACAG
Seq A exon
GTCAGCAATGCCCAGACAACCTGGCGTGGCTGTGTGAGGAATGGCCCCCAGCCTCCGACGGTGCCCTCCCCTCCCGGCTCGGGATGTGTCTTGCTGAGATCAGGCCCACGTGTGTAGGGCCAGGAGCAAAGACAAAGGGGCTGTGAGGGGGATGAGGGCAGGGGTGTGGCTGGGGTGGGGTCCAGCCAGTGCCGTGACCCACTGGATATGGGGGCCTTGAGTCCACAGGTGGCTCGTGTGGATTTCCTATGTGGTTTGTGTGAGGAGGTGCTAAGTCAGGATTTTACCCTCCAAGTAGGCCCAGAAGTAGAAGTTGAGATTCTTTGAGAAGTGCAGTTGGATTGCTGATCCCACCCACTGATGGTAGCTGATTGGTCACTAGGGCAAAGTCACCAAGAAAAAGCATTTCAGAGTCATTGGCGTCCTGCTCCGGAGGGCCGGGAGCACAGGAGCTTTTGTTGAAGGAGCTTTTTTTCTGTTCTGGTGAATTCTTTCCTTGGGGGCCGTAGGGTCCCAGCCACTGACAGCAGGATGGCTTTAAGGTGAGAAATTGTGAAGGTGTCATATCTGCTGATCCTTCTCTTGTTAGCCTAAACTTGGGGTGTAGATTTATTCCCTGAGAGGGTCAGAGATTCCTCCCTGAGCTCTTAGACTGCCCCAGATCTTGTGAAAATCTGGCTGGTCCATGTTGTCAGGTGACAGTGGGCTCTGGCCGCCCACGTGGGCTGGGCCCTGACCCCGGCCTCTGTCCCGTGCTTCATGGAGCTGCCAGGATGGGCTGTGGGAAGAGGGTTTCAGCTTGACACTTTGATTCGGTTCCGTTTCACGATGGGTATGATACTGAGGCAGCAGCACACGTGTGCCGTTTGTAAGTCAGTGTGTGCAGGTATTTATTGCAAGGCTGTTCTTGCCTTTTTAGAGAAGACAGGCTTATGTGACTGCACAGCGGGATGTCCTGCTCCGTGGCGCAGTGTGGAAAATACTGGACAAGCGAAGGATATCCGGAAGCTTCTACAGCCGTCTGTCCTGTGGAACTGCGCGTCATTTTGTTGGTTGCCTGTGCGTCTTGTGTTGTTTCTGTTTCATGACCATTCGCTTATTTTCTTTCCCTTTTCAG
Seq C2 exon
AAATGGCTCAGGGAACTGTTGGAGGCGTGTTCATCACGACGGCAGGTTCCACGTCTAACGGCACAAGGTTCTCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198176:ENST00000375370:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.102
Domain overlap (PFAM):
C1:
PF087815=DP=FE(38.6=100)
A:
NA
C2:
PF087815=DP=PD(5.5=29.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTTTGACAACACATTTGAAATCCA
R:
CTGGCAGAGAACCTTGTGCC
Band lengths:
230-1347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains