RnoINT0150097 @ rn6
Intron Retention
Gene
ENSRNOG00000019222 | Tfdp1
Description
transcription factor Dp-1 [Source:RGD Symbol;Acc:1560344]
Coordinates
chr16:81122266-81123102:+
Coord C1 exon
chr16:81122266-81122432
Coord A exon
chr16:81122433-81123023
Coord C2 exon
chr16:81123024-81123102
Length
591 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
CTCTGCTTCTGTTTTTTCAGAGA
3' ss Score
9.89
Exon sequences
Seq C1 exon
ATTTGAGTATCTGTTCAACTTTGACAACACGTTTGAAATCCACGATGATATCGAGGTGCTCAAGCGCATGGGCATGGCCTGTGGGCTGGAGTCGGGCAGCTGCTCTGCTGAAGACCTCAAGGTGGCGAGAAGTCTGGTACCAAAAGCTCTAGAACCGTATGTGACAG
Seq A exon
GTCAGTTGTGCCCTGCGACTGGCCATGCTGCGACCCAGAATCCCTAGTGCCTGGGTGTCTGCTGAGGTCGGGCTGATCGTTGGTCACATGACCAACCTTGGGTGTTGGGCTCCATGAGTAGCACCTGTGGTTTTCATGGTGCAAGTGTCACGGGGTGAGGATCTCTCTATCCTGTAAGATATTACCTGCACTTGAGCCTTCCTGCAGCAGATGCAGGCCTGGCTGTGCCTGTAGCTCTGTGTGAGTCTGAGGGGGGAGGTGGGACGCTCTGCATGCGTGCTTAGTCCCTGTCCCTACTCTCTGGTGCTGCTTGTCCTCCTAAGGGGACAGGCATGCTCCTGAGGAACCAACCACTCCTGGCTCTTACGTAGAGAGAGGGCAGGGAGAGCAAGCTGGCAGGGCACCTGCAGGTCTCCCCAAGCTGTGTCTGCTCATGCAGCCTTGCTTCTCCTCACATACTGGGTCTCGGTTTTTTTGGTCTCTGCCTCTGGCTGGCCCAGAGCTCACAGATCTGCCTCACAGGTGATGGGGTTAAGGCGGGTGCCGGACAGTTGACTTCTCGGTTTTATGACTCTGCTTCTGTTTTTTCAG
Seq C2 exon
AGATGGCTCAGGGATCCATTGGCGGAGTATTTGTCACGACAACAGGTTCTACATCCAATGGCACAAGGCTTTCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019222:ENSRNOT00000026150:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.407
Domain overlap (PFAM):
C1:
PF087815=DP=FE(38.6=100)
A:
NA
C2:
PF087815=DP=PD(5.5=29.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTATCTGTTCAACTTTGACAACACG
R:
GCAGAAAGCCTTGTGCCATTG
Band lengths:
238-829
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]