HsaINT0168488 @ hg19
Intron Retention
Gene
ENSG00000244187 | TMEM141
Description
transmembrane protein 141 [Source:HGNC Symbol;Acc:28211]
Coordinates
chr9:139686163-139686482:+
Coord C1 exon
chr9:139686163-139686229
Coord A exon
chr9:139686230-139686398
Coord C2 exon
chr9:139686399-139686482
Length
169 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
GGGACCTCGGCTCTTTGCAGGCA
3' ss Score
5.33
Exon sequences
Seq C1 exon
GGACTCGGGGAGTATGCCGCATGCCAGTCACACGCCTTCATGAAGGGCGTTTTCACCTTCGTCACAG
Seq A exon
GTAGGCTGCGTCCAGGTGTCCTGCGGCTGGGAGAGAACGCACCCTCCCGCCCTGCCCTGACTCCCCAGCAGGGGGCGCCAAGTCACCTGCCCGCAGGTGCTGGGGGCCTGGCAAGGTGGGCCCTGGCTATCCCCGGGTACAGGTTGATGGGGACCTCGGCTCTTTGCAG
Seq C2 exon
GCACCGGCATGGCCTTTGGCTTGCAGATGTTCATTCAGAGGAAGTTTCCATACCCTTTGCAGTGGAGCCTCCTAGTGGCCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000244187-TMEM141:NM_032928:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF151101=TMEM141=FE(22.9=100),PF140121=DUF4229=PU(14.9=30.4)
A:
NA
C2:
PF151101=TMEM141=FE(29.2=100),PF140121=DUF4229=FE(59.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTCGGGGAGTATGCCG
R:
ACTAGGAGGCTCCACTGCAAA
Band lengths:
143-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)