HsaINT0168488 @ hg38
Intron Retention
Gene
ENSG00000244187 | TMEM141
Description
transmembrane protein 141 [Source:HGNC Symbol;Acc:HGNC:28211]
Coordinates
chr9:136791711-136792030:+
Coord C1 exon
chr9:136791711-136791777
Coord A exon
chr9:136791778-136791946
Coord C2 exon
chr9:136791947-136792030
Length
169 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
GGGACCTCGGCTCTTTGCAGGCA
3' ss Score
5.33
Exon sequences
Seq C1 exon
GGACTCGGGGAGTATGCCGCATGCCAGTCACACGCCTTCATGAAGGGCGTTTTCACCTTCGTCACAG
Seq A exon
GTAGGCTGCGTCCAGGTGTCCTGCGGCTGGGAGAGAACGCACCCTCCCGCCCTGCCCTGACTCCCCAGCAGGGGGCGCCAAGTCACCTGCCCGCAGGTGCTGGGGGCCTGGCAAGGTGGGCCCTGGCTATCCCCGGGTACAGGTTGATGGGGACCTCGGCTCTTTGCAG
Seq C2 exon
GCACCGGCATGGCCTTTGGCTTGCAGATGTTCATTCAGAGGAAGTTTCCATACCCTTTGCAGTGGAGCCTCCTAGTGGCCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000244187:ENST00000290079:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF151101=TMEM141=FE(22.9=100)
A:
NA
C2:
PF151101=TMEM141=FE(29.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTCGGGGAGTATGCCG
R:
ACTAGGAGGCTCCACTGCAAA
Band lengths:
143-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains