GgaINT1027926 @ galGal4
Intron Retention
Gene
ENSGALG00000009054 | TMEM141
Description
transmembrane protein 141 [Source:HGNC Symbol;Acc:HGNC:28211]
Coordinates
chr17:412788-413042:-
Coord C1 exon
chr17:412976-413042
Coord A exon
chr17:412872-412975
Coord C2 exon
chr17:412788-412871
Length
104 bp
Sequences
Splice sites
5' ss Seq
CGGGTACGG
5' ss Score
8.92
3' ss Seq
CCGGCTCGCTGTTCGGGCAGGCA
3' ss Score
5.69
Exon sequences
Seq C1 exon
GCGCTGCAGCAGTACGCGGCGTGTCAGGCCCACGCCTTCATGAAGGGCATCGGCACCTTCCTGGCGG
Seq A exon
GTACGGCCACGGAGGGACGCGGCGGGAGGGGCTGCCCCGGTACCGACTGCCCCCCGGCCCTGACGGCGCCGTGGCCGGGACCGCCCGGCTCGCTGTTCGGGCAG
Seq C2 exon
GCAGCGGCGCTGCGTTTGCCGTGCAGAAGCTGGTGAACAGGAGGCTGCCGTACGCGCTGCAGTGGAACCTGCTGCTGTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009054:ENSGALT00000034208:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF151101=TMEM141=FE(23.2=100)
A:
NA
C2:
PF151101=TMEM141=FE(29.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTACGCGGCGTGTCAG
R:
CAGACAGCAGCAGGTTCCAC
Band lengths:
139-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]