HsaINT0076845 @ hg38
Intron Retention
Gene
ENSG00000180448 | ARHGAP45
Description
Rho GTPase activating protein 45 [Source:HGNC Symbol;Acc:HGNC:17102]
Coordinates
chr19:1074614-1074879:+
Coord C1 exon
chr19:1074614-1074724
Coord A exon
chr19:1074725-1074798
Coord C2 exon
chr19:1074799-1074879
Length
74 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
3' ss Seq
CACGGCCCGTCTCGCCCCAGCCC
3' ss Score
7.29
Exon sequences
Seq C1 exon
CCCCACATGCCGCTCCTGTCCATCTACTCGCTGGCCCTGGAGCAGGACCTGGAGTTCGGCCACAGCATGGTGCAGGCGGTGGGCACCTTGCAGACCCAGACCTTCATGCAG
Seq A exon
GTGCGTGGTGCCCGGGAGGGCGGGCTGGGCGGGGGTGTCACCGGGGTACCCACTCACGGCCCGTCTCGCCCCAG
Seq C2 exon
CCCCTGACCCTGCGGCGGCTTGAACACGAGAAGCGCAGGAAGGAGATCAAGGAGGCCTGGCACCGTGCCCAGAGGAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180448:ENST00000539243:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.537
Domain overlap (PFAM):
C1:
PF0061118=FCH=PD(33.7=86.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCCGCTCCTGTCCATCTA
R:
TGCCAGGCCTCCTTGATCTC
Band lengths:
168-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development