GgaEX0027602 @ galGal4
Exon Skipping
Gene
ENSGALG00000009054 | TMEM141
Description
transmembrane protein 141 [Source:HGNC Symbol;Acc:HGNC:28211]
Coordinates
chr17:412788-413332:-
Coord C1 exon
chr17:413121-413332
Coord A exon
chr17:412976-413042
Coord C2 exon
chr17:412788-412871
Length
67 bp
Sequences
Splice sites
3' ss Seq
TGCTGACGGTGTCTCCGCAGGCG
3' ss Score
9.89
5' ss Seq
CGGGTACGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
CGGCCGAGCCGGGGCCGGGCGCGGGGCGGCAGTAGCAGAGGTAGCGGTCCGGACCGTCCCGAAGCACTCGGAAAGGCCCCGACGGCTCCGCCATGGCAGCGCCGGAAGGGGCGGTGCGAGAGGCGCGGGGCGGCGCTGCGGGAACGGACGGCGCCGTGATGGTGCACCTCGGGCTGCGGCGGGTGGAGGACAGCGTGGCCGCCAAACACCCG
Seq A exon
GCGCTGCAGCAGTACGCGGCGTGTCAGGCCCACGCCTTCATGAAGGGCATCGGCACCTTCCTGGCGG
Seq C2 exon
GCAGCGGCGCTGCGTTTGCCGTGCAGAAGCTGGTGAACAGGAGGCTGCCGTACGCGCTGCAGTGGAACCTGCTGCTGTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009054_MULTIEX1-1/3=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF151101=TMEM141=PU(15.8=83.3)
A:
PF151101=TMEM141=FE(23.2=100)
C2:
PF151101=TMEM141=FE(29.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCACTCGGAAAGGCCC
R:
AGCTTCTGCACGGCAAACG
Band lengths:
183-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]