RnoEX6030586 @ rn6
Exon Skipping
Gene
ENSRNOG00000013220 | Arhgap45
Description
Rho GTPase activating protein 45 [Source:RGD Symbol;Acc:1308662]
Coordinates
chr7:12735946-12736473:-
Coord C1 exon
chr7:12736409-12736473
Coord A exon
chr7:12736114-12736224
Coord C2 exon
chr7:12735946-12736026
Length
111 bp
Sequences
Splice sites
3' ss Seq
CCAGCCATCTTGCCCTACAGCCC
3' ss Score
7.58
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
AGATGGAATTCGCCAAAGGGCTGCAGAAGGTCGTCCATAACTGCAGACAGAACGTCACTCATGCG
Seq A exon
CCCCACATGCCTCTCTTATCCATCTACTCACTGGCCCTGGAACAAGATCTGGAGTTTGGCCACGGCATGGTGCAGGCAGTGGGCACGCTGCAGACCCAGACCTTCATGCAG
Seq C2 exon
CCCCTGACCCTGCGGCGGTTGGAGCATGAGAGACGCAGGAAGGAGATCAAAGAATCCTGGCATCGTGCACAGAGGAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013220-'16-10,'16-9,17-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.027 C2=0.963
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(22.8=100)
A:
PF0061118=FCH=PD(35.9=89.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGGAATTCGCCAAAGGG
R:
CAGCTTCCTCTGTGCACGATG
Band lengths:
146-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]