DreEX6098618 @ danRer10
Exon Skipping
Gene
ENSDARG00000062049 | hmha1b
Description
histocompatibility (minor) HA-1 b [Source:ZFIN;Acc:ZDB-GENE-071213-2]
Coordinates
chr22:17601742-17606410:-
Coord C1 exon
chr22:17606349-17606410
Coord A exon
chr22:17603226-17603336
Coord C2 exon
chr22:17601742-17601822
Length
111 bp
Sequences
Splice sites
3' ss Seq
GTGTTTGTTGGTGTTTTCAGCCA
3' ss Score
7.31
5' ss Seq
ATGGTACAG
5' ss Score
3.5
Exon sequences
Seq C1 exon
AGCTGGAGTTCTCCAAGGGTTTACAGAGGATCTATCAGTCGTGTAAACAGACCATCACACAG
Seq A exon
CCACACATGCCCTTCTTCACCATCTACTCTCAGGCACTGGAGCAGGATCTGGAGCAGAGCAATGGCATGCATCAGGCTGCCGCAACTCTACAGAACCAGACCTTTATCATG
Seq C2 exon
CCTCTGATGGTCCGCAAACAAGAGCATGAGAAGAAACGCAAAGAGATCAAGGAGCAGTGGCTGAAGGCCAAAAGAAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062049-'7-10,'7-8,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.216 C2=0.185
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(22.0=100)
A:
PF0061118=FCH=PD(35.2=86.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGGAGTTCTCCAAGGGTT
R:
CAGTTTTCTTTTGGCCTTCAGC
Band lengths:
143-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]