MmuEX0023066 @ mm9
Exon Skipping
Gene
ENSMUSG00000035697 | Hmha1
Description
histocompatibility (minor) HA-1 [Source:MGI Symbol;Acc:MGI:1917969]
Coordinates
chr10:79484540-79485100:+
Coord C1 exon
chr10:79484540-79484604
Coord A exon
chr10:79484822-79484932
Coord C2 exon
chr10:79485020-79485100
Length
111 bp
Sequences
Splice sites
3' ss Seq
CTGGCTGTCCTGCCCCACAGCCC
3' ss Score
9.96
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
AGATGGAATTCGCCAAAGGTCTCCAGAAGGTTGTCCACAACTGCAGACAGAGCGTCACACACGAG
Seq A exon
CCCCACATGCCTCTCTTGTCCATCTACTCACTGGCCCTGGAACAAGATTTGGAGTTTGGCCACGGCATGGTGCAGGCAGCGGGCACACTGCAGACCCAGACCTTCATGCAG
Seq C2 exon
CCCCTGACGCTGCGGCGGTTGGAGCATGAGAGGCGCAGGAAGGAGATCAAAGAATCTTGGCATCGAGCACAGAGGAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035697-'12-10,'12-9,13-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=0.108 C2=1.000
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(23.3=100)
A:
PF0061118=FCH=PD(34.4=83.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGGAATTCGCCAAAGGTCT
R:
CAGCTTCCTCTGTGCTCGATG
Band lengths:
146-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: