HsaEX6091466 @ hg19
Exon Skipping
Gene
ENSG00000180448 | HMHA1
Description
histocompatibility (minor) HA-1 [Source:HGNC Symbol;Acc:17102]
Coordinates
chr19:1074342-1074878:+
Coord C1 exon
chr19:1074342-1074406
Coord A exon
chr19:1074613-1074723
Coord C2 exon
chr19:1074798-1074878
Length
111 bp
Sequences
Splice sites
3' ss Seq
AGCCGGTGCCCCACCCACAGCCC
3' ss Score
5.84
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
AGATGGAGTTTGCCAAGGGCCTGCAGAAGATCGCTCACAACTGCAGACAGAGCGTCATGCAGGAG
Seq A exon
CCCCACATGCCGCTCCTGTCCATCTACTCGCTGGCCCTGGAGCAGGACCTGGAGTTCGGCCACAGCATGGTGCAGGCGGTGGGCACCTTGCAGACCCAGACCTTCATGCAG
Seq C2 exon
CCCCTGACCCTGCGGCGGCTTGAACACGAGAAGCGCAGGAAGGAGATCAAGGAGGCCTGGCACCGTGCCCAGAGGAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180448-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.000 C2=0.556
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(22.1=100)
A:
PF0061118=FCH=PD(33.7=86.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGGAGTTTGCCAAGGG
R:
CAGCTTCCTCTGGGCACG
Band lengths:
146-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)