GgaEX0027602 @ galGal3
Exon Skipping
Gene
ENSGALG00000009054 | TMEM141
Description
NA
Coordinates
chr17:796627-797533:-
Coord C1 exon
chr17:796960-797533
Coord A exon
chr17:796815-796881
Coord C2 exon
chr17:796627-796710
Length
67 bp
Sequences
Splice sites
3' ss Seq
TGCTGACGGTGTCTCCGCAGGCG
3' ss Score
9.89
5' ss Seq
CGGGTACGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
GTTCCCGCAGCCCCAGCGAGACGGTCCCGCGGCCCAGCGCTGCCCTGCCAGGAGGGAGCGCGGTGAGCCGGGGCCCGCAGCCCGGCGGGGGACGGACGGACGGACGGAGGTCCCGGGTCCCACTCCCCCGCCGGGCGCCCACCTGAGCTCCGCGACGCCGTCTTCCGGCTGATCCCCGCCGAGCCGCCCAGCCCACACCTCCAGCGCGTCGGTCACACTGCGGGGCAGAGGTTCAGGCCGGGCCCCCTCCCCCCCCGCACCGCCCCTCCCGGCACTCACTAGACGGTGACGGCCGAGCCGGGGCCGGGCGCGGGGCGGCAGTAGCAGAGGTAGCGGTCCGGACCGTCCCGAAGCACTCGGAAAGGCCCCGACGGCTCCGCCATGGCAGCGCCGGAAGGGGCGGTGCGAGAGGCGCGGGCGGCGCTGCGGGAACGGACGGCGCCGTGATGGTGCACCTCGGGCTGCGGCGGGTGGAGGACAGCGTGGCCGCCAAACACCCG
Seq A exon
GCGCTGCAGCAGTACGCGGCGTGTCAGGCCCACGCCTTCATGAAGGGCATCGGCACCTTCCTGGCGG
Seq C2 exon
GCAGCGGCGCTGCGTTTGCCGTGCAGAAGCTGGTGAACAGGAGGCTGCCGTACGCGCTGCAGTGGAACCTGCTGCTGTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009054_CASSETTE2
Average complexity
S
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.453
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF151101=TMEM141=PU(57.4=45.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCACTCGGAAAGGCCC
R:
CAGCTTCTGCACGGCAAAC
Band lengths:
183-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]