MmuEX0047741 @ mm9
Exon Skipping
Gene
ENSMUSG00000026939 | Tmem141
Description
transmembrane protein 141 [Source:MGI Symbol;Acc:MGI:1098773]
Coordinates
chr2:25476895-25477525:-
Coord C1 exon
chr2:25477454-25477525
Coord A exon
chr2:25477128-25477194
Coord C2 exon
chr2:25476895-25476978
Length
67 bp
Sequences
Splice sites
3' ss Seq
TCCCCGCCCCCTAATCCCAGGGA
3' ss Score
7.8
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GGCAGAACCTGACCAACCATGGTGAATCTGGGCTTGTCCCGTGTGGATGACGCCGTGGCCGCCAGGCACCCG
Seq A exon
GGACTCGAGGAATTTGCTGCCTGCCAGTCGCACGCCTTCATGAAGGGCGTTTTCACTTTTGTCACAG
Seq C2 exon
GCACTGGTGCGACTTTTGGCCTGCTGATGTTCATTAAGAGGAAGTTTCCATACCCTGTGCAGTGGAGCTTCCTAGTGTCTGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026939-'0-6,'0-4,1-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF151101=TMEM141=PU(17.0=88.9)
A:
PF151101=TMEM141=FE(23.4=100)
C2:
PF151101=TMEM141=FE(29.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAACCTGACCAACCATGG
R:
GGCAGACACTAGGAAGCTCCA
Band lengths:
154-221
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: