DreEX0079438 @ danRer10
Exon Skipping
Gene
ENSDARG00000101963 | tmem141
Description
transmembrane protein 141 [Source:ZFIN;Acc:ZDB-GENE-060929-272]
Coordinates
chr5:53661547-53662885:-
Coord C1 exon
chr5:53662745-53662885
Coord A exon
chr5:53661866-53661932
Coord C2 exon
chr5:53661547-53661630
Length
67 bp
Sequences
Splice sites
3' ss Seq
TGATATTTTGTTGTCCTCAGGGC
3' ss Score
11.15
5' ss Seq
TAGGTTAGT
5' ss Score
5.5
Exon sequences
Seq C1 exon
ACGCAACAACAACAACAGCAGCAACGCTCGACAAGAGGAGGTCCAATTTGTTTAACCTTATGGTTTATAGCTCATACTTGTAGCGCCATGGTCAATATTGGACTCAGCAAAGTGGATGATGCAATTGTAGCAAAGCACCCG
Seq A exon
GGCTTGCAGCAGTATGTTGCCTGTCAGTCTTATGCCTTTATGAAAGGCACAGCAAGCTTCATACTAG
Seq C2 exon
GCACAGTGGGTATATTTTTTGGACAGAGAGCACTTCAGAAAATAATCAAATATCCCCTTCAGTGGAACCTTTTTGTATCTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101963_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF151101=TMEM141=PU(16.7=88.9)
A:
PF151101=TMEM141=FE(22.9=100)
C2:
PF151101=TMEM141=FE(29.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACAACAACAACAGCAGCA
R:
TCTGAAGTGCTCTCTGTCCAA
Band lengths:
178-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]