RnoEX0091340 @ rn6
Exon Skipping
Gene
ENSRNOG00000028254 | Tmem141
Description
transmembrane protein 141 [Source:RGD Symbol;Acc:1561492]
Coordinates
chr3:2844988-2845593:-
Coord C1 exon
chr3:2845518-2845593
Coord A exon
chr3:2845223-2845289
Coord C2 exon
chr3:2844988-2845071
Length
67 bp
Sequences
Splice sites
3' ss Seq
CCCCCACCCTCCAATTCCAGGGA
3' ss Score
9.82
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CCTTGGCGGAACCTGACCAACCATGGTGAATCTGGGCCTGTCCCGTGTAGATGACGCCGTCGCCGCCAAGCACCCG
Seq A exon
GGACTCGAGGAATATGCTGCCTGCCAGTCGAACGCCTTCATGAAAGGCGTTTTCACTTTTGTCACAG
Seq C2 exon
GCACTGGTGTGACTTTTGGCCTGCAGATGTTCATTAAGAGGAAGTTTCCATACCCTGTGCAGTGGGGCTTCCTGGTGTCTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028254-'0-4,'0-1,2-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF151101=TMEM141=PU(16.7=88.9)
A:
PF151101=TMEM141=FE(22.9=100)
C2:
PF151101=TMEM141=FE(29.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGCGGAACCTGACCAAC
R:
CGGCAGACACCAGGAAGC
Band lengths:
159-226
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]