BtaEX0036753 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013889 | TMEM141
Description
Bos taurus transmembrane protein 141 (TMEM141), mRNA. [Source:RefSeq mRNA;Acc:NM_001034462]
Coordinates
chr11:106376122-106376837:-
Coord C1 exon
chr11:106376738-106376837
Coord A exon
chr11:106376384-106376450
Coord C2 exon
chr11:106376122-106376205
Length
67 bp
Sequences
Splice sites
3' ss Seq
CAACCCCTTCCCCCTCCCAGGGA
3' ss Score
8.92
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GGCCGGGTGTAGGTCAGCCCGCCGGCTCCCCGCCGCCGCGCCAGCCATGGTGAACTTGGGCCTGTCCCGGGTGGACGACGCCGTGGCCAGCAAGCACCCG
Seq A exon
GGACTAGGCGAGTACGCGGCTTGCCAGTCGAACGCTTTCGTGAAGGGCGTTTCCACCTTTGTCACAG
Seq C2 exon
GCACCGGTGCAACCTTCGGCCTGCAGATGCTGGTTCAAAGGAAGCTTCCATACCCCTTTCAGTGGAAGGTGCTGCTGGCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013889-'0-4,'0-0,2-4
Average complexity
C1
Mappability confidence:
100%=100=83%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF151101=TMEM141=PU(16.7=88.9)
A:
PF151101=TMEM141=FE(22.9=100),PF140121=DUF4229=PU(6.8=13.0)
C2:
PF151101=TMEM141=FE(29.2=100),PF140121=DUF4229=FE(63.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTAGGTCAGCCCGCC
R:
CAGCAGCACCTTCCACTGAAA
Band lengths:
172-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development