HsaINT0171522 @ hg19
Intron Retention
Gene
ENSG00000172236 | TPSAB1
Description
tryptase alpha/beta 1 [Source:HGNC Symbol;Acc:12019]
Coordinates
chr16:1290940-1291325:+
Coord C1 exon
chr16:1290940-1291000
Coord A exon
chr16:1291001-1291153
Coord C2 exon
chr16:1291154-1291325
Length
153 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TGACCTGGCACCTGCCCCAGCCC
3' ss Score
3.46
Exon sequences
Seq C1 exon
ATGCTGAATCTGCTGCTGCTGGCGCTGCCCGTCCTGGCGAGCCGCGCCTACGCGGCCCCTG
Seq A exon
GTGAGTCCCAGCCGGGGTCCACCCTGCCCCTCACCACATTCCACAGGTCAGGGCCTGGGTGGGTTCTGGGGAGGTCGGGCTGGCCCCCACACAGGGAAGGGCTGGGCCCAGGCCTGGGGCTGCTTCCTGGTCCTGACCTGGCACCTGCCCCAG
Seq C2 exon
CCCCAGGCCAGGCCCTGCAGCGAGTGGGCATCGTCGGGGGTCAGGAGGCCCCCAGGAGCAAGTGGCCCTGGCAGGTGAGCCTGAGAGTCCACGGCCCATACTGGATGCACTTCTGCGGGGGCTCCCTCATCCACCCCCAGTGGGTGCTGACCGCAGCGCACTGCGTGGGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172236-TPSAB1:NM_003294:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(19.8=81.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTGAATCTGCTGCTGCTG
R:
CACTGGGGGTGGATGAGGG
Band lengths:
203-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)