HsaINT0172102 @ hg19
Intron Retention
Gene
ENSG00000124496 | TRERF1
Description
transcriptional regulating factor 1 [Source:HGNC Symbol;Acc:18273]
Coordinates
chr6:42418915-42419783:-
Coord C1 exon
chr6:42419759-42419783
Coord A exon
chr6:42419000-42419758
Coord C2 exon
chr6:42418915-42418999
Length
759 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TATTGAAATTACTCCATCAGCTC
3' ss Score
2.23
Exon sequences
Seq C1 exon
GGCGAGGATGGGGAGCAATGCAAAG
Seq A exon
GTAAGGCCAGGTTACCGCGGCTCGGCCCCGAGTGGGCTGCGACCGGGGGAGGGGCGAGAGATACATATGTATTTCTGTCTCCCCAGCACACCCCCTTCCCTCTAAGCGATGGCTGAGAGGCGGTGCATGCAGATGGGGAGTAAGTTTCCTGAAGGGGAGGGTGGATGCACGCGCGCAGCCCGGCGCTGCAAATTTCCACTGGGGAGGGAGAACGGCTGGATGCGGAGAGTTTGGAGTTGCTTGCGGCGGAGGGCAGGAAGGGGAGCAGGGCTGGGAAAGGGGGCTGGCGGGCGCTATATCTGGGAGTAAGTTTCCAGCATCAGGAGAGCCTGCACGCTTGCTCACTAGTAAGTTTCTGGCCGGGGAGGGCGCATGGGGAGGAGGAGAGGGAGGGGTGCATGTATATAGAAGGGGGGAGGGGGGAGCAGATTTCCTGCGGGGAGGCTGAATGCATATGGAGAGTAGATTTCCTGAAGGGAGGGTGGAGGCGTAGACGGACCGAGTAAGTTTCTTGCTGGGGTGGTGGAGGAGGTGGTGGGTTGGTGCTTTGGAAACCCAAAGCTTCCTACCCTGGGTGGGGGAGCACACTCTTGTCGGGGGGACGAGGGGCCAGGTTCCCTGCTGGGGAGAGGGGCTTGCATCTGGGGAGTATGTTTCCTGGCGGAGCGATATTTGTTTACAGGCTGAGGGCAGTACAGTAAGTGAGTAGCGCTGAGAGAAGGCGGCTGACATAAATTAATATTGAAATTACTCCATCAG
Seq C2 exon
CTCTGCTCGCCCCCCATCTCACCCCCCAAGCGGATACTGGTCTTCTCGTCGGATTGCCCATGCACTTGTTGCAGAAACAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124496-TRERF1:NM_033502:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)