HsaINT0174149 @ hg38
Intron Retention
Gene
ENSG00000168026 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr3:39128334-39128932:+
Coord C1 exon
chr3:39128334-39128488
Coord A exon
chr3:39128489-39128716
Coord C2 exon
chr3:39128717-39128932
Length
228 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CTCTGCTGTGCTCCTCCTAGGTC
3' ss Score
10.17
Exon sequences
Seq C1 exon
AGCTAGAGAATGCCCAGAGCATCCTGCAGCGTTGCCTGGAGCTGGACCCCGCCTCCGTGGATGCCCATCTCCTCATGTGTCAGATCTACTTGGCTCAGGGCAACTTTGGCATGTGCTTCCACTGCTTAGAGCTGGGTGTCAGCCACAACTTCCAG
Seq A exon
GTGGGTGCCCTCTCATCCTCTCAGCATCCCAAAGCCCAGCTAGCTGTGGCCCCTGTTTGCCTTCTGAGAGTAGCCCCAGGGGCTAGCTGTGTCCCGTAGATCTTTCTGCTCGTCCAAAGGCAGGGGTAGGCTCAGTGGGCTCCTGAGGCTTTCTCTGACCTGGCTGCTGTGAGCAGCAGCAGTAGCAGCAGTGAACTGGAGCCCCACACTCTGCTGTGCTCCTCCTAG
Seq C2 exon
GTCCGAGATCACCCCCTCTACCACCTCATCAAGGCCAGGGCCCTCAACAAGGCTGGAGACTATCCAGAGGCCATAAAGACGCTGAAAATGGTCATCAAATTGCCAGCTCTGAAGAAGGAAGAAGGCAGAAAGTTCCTCAGGCCCTCTGTGCAGCCTAGCCAGCGGGCATCCATCTTATTGGAACTGGTGGAGGCCCTCCGGCTGAATGGGGAGCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168026:ENST00000431162:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.064 A=NA C2=0.162
Domain overlap (PFAM):
C1:
PF128952=Apc3=FE(60.0=100)
A:
NA
C2:
PF128952=Apc3=PD(34.9=41.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGCCCATCTCCTCATGT
R:
GGGCCTCCACCAGTTCCAATA
Band lengths:
294-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains