BtaINT0154281 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010477 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr22:12505024-12505604:+
Coord C1 exon
chr22:12505024-12505181
Coord A exon
chr22:12505182-12505388
Coord C2 exon
chr22:12505389-12505604
Length
207 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
CTCTGCTGACGCTCCTTTAGGTC
3' ss Score
9.13
Exon sequences
Seq C1 exon
GGGAGTTAGAGCATGCCCAGAGCACCCTGCAGCGTTGCCTGGAGCTGGACCCCACCTCCGTGGACACCCACCTCCTCATGGCTCAGATCTACCTGGCTCAGGGCAACTTTGCCATGTGCTCCCACTCCTTGGAGCTGGGCGTCAGCCACAACTTCCAG
Seq A exon
GTGGGGGTCCCCGATGCCCTGTCGCTGCTCAGCATCCCACAGCCCCACTAGCTTCAGCCCCTACTCGCCTTGGGAGAGTAGCCCCAGGAGCTGCCAGAATCCCTCAGCCCCTTCTGCTGGCCCAAAGGCAGGGACTGGCTCTGTGGAATCCTGGGGCTTTCTCCCCTATGGGAGTTGGAACCCCACACTCTGCTGACGCTCCTTTAG
Seq C2 exon
GTCCGAGACCACCCCCTTTACCACTTCATCAAGGCCAAGGCCCTCAACAAGTCTGGGGACTATCCAGAAGCCATAAAGGCACTGAAGATGATCATAAAATTACCAACTCTGAGGACGGAAGAGAACAAGAAGTTCCGTGGGCCCTGCGTGCGCCCCAGCGAGCGGGTGTCCATCTTACTGGAGCTGGCAGATGCCCTCCGGATGAACGGAGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010477:ENSBTAT00000048382:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.028
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(74.6=88.7)
A:
NA
C2:
PF134141=TPR_11=PU(82.1=95.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACACCCACCTCCTCATG
R:
GCATCTGCCAGCTCCAGTAAG
Band lengths:
292-499
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]