HsaINT0174160 @ hg19
Intron Retention
Gene
ENSG00000168026 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:30761]
Coordinates
chr3:39177848-39178551:+
Coord C1 exon
chr3:39177848-39177998
Coord A exon
chr3:39177999-39178389
Coord C2 exon
chr3:39178390-39178551
Length
391 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TGGTGTTTTCTCCACCACAGGCA
3' ss Score
9.16
Exon sequences
Seq C1 exon
ACAATTTTTTGGTATTGCATAAATTAATCGATCTGCTAAGAAGAAGTGGAAAACTTGAAGACATTCCTGCCTTCTTTGAATTGGCCAAGAAGGTGTCTAGCCGGGTGCCTTTGGAACCAGGGTTCAATTACTGCAGAGGTATCTACTGCTG
Seq A exon
GTGAGTTGGGTGTGGTGTGTTGAGGGGCAGCTGTGTGCAGGAAGCCCTACTGGCAGATAGGCTAGGCCCTTGCTCTGCACAAAAGGAGCAGAAATTCTGCCTCCAGGACACCCGGACCCAGCAAGTGAGGGCCCATGGGGGCAGGGGTGGAACCCTGTGGAAGTCAGGGAGAGCCTGCAGCCTCTGGATGGAGGCCAGGTGAGGGCCACTTGGGCAGGCCACCAGCCTGCATCCAACACACAGGTCCGACGCCCGCATCTCCTCCAGGGGAGCTGGGAAACCAGAGATCCAGCCTCTGCTTTGTGCAGACTCACAAAGTGGTCCTTGTATATCCCTGCCCTGTCTGGGCCTCAGTTTCCCTCACTGATTCTTGGTGTTTTCTCCACCACAG
Seq C2 exon
GCACATAGGGCAGCCCAACGAAGCCTTAAAGTTCCTGAACAAGGCACGCAAGGACAGCACTTGGGGCCAGAGCGCCATCTACCACATGGTGCAGATCTGTCTGAATCCAGACAACGAGGTTGTGGGCGGAGAGGCTTTTGAGAACCAGGGAGCTGAGAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168026-TTC21A:NM_145755:23
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.059
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTATTGCATAAATTAATCGATCTGC
R:
TTGCTCTCAGCTCCCTGGTTC
Band lengths:
303-694
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)