RnoINT0157554 @ rn6
Intron Retention
Gene
ENSRNOG00000034089 | Ttc21a
Description
tetratricopeptide repeat domain 21A [Source:RGD Symbol;Acc:1308806]
Coordinates
chr8:128653700-128654335:+
Coord C1 exon
chr8:128653700-128653850
Coord A exon
chr8:128653851-128654173
Coord C2 exon
chr8:128654174-128654335
Length
323 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
ATTTCTTTCACTCACTGCAGGCA
3' ss Score
9.67
Exon sequences
Seq C1 exon
ACAATTTTTTGGTACTGAATAAACTGATCGACCTGCTACGACGGAGCGGCAAGCTTGAAGAGGCCCCTGCTTTCTTTGAACTGGCCAAGAAGGTGTCTAGCCGGGTGCCTTTGGAACCAGGGTTTAACTACTGCCAAGGCATTTACTGCTG
Seq A exon
GTGAGTTAGGCTGGAGGAGACAGAGGGTCAGTGGTGGAATAAGAGACACCCCCACATGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGTGCAAGGTCCTGGGTTCGGTCCCCAGCTCCGAAAAAAGAAAAAAAAAAAAAAAGAGAGAGACACCCCCACACATAGCAGGTAGCTAGTGTTTTATGCTCAGTAGAAGAGAGACAGAGCAGCCTCCAGGACCAGAAGTCCTCAGACCTGGTGGCCATGCCATGCCCCCTGGCCTCACGGTTCACCAGCTCAGGGCTCTTGGCATTTCTTTCACTCACTGCAG
Seq C2 exon
GCACATTGGACAGCCCAATGAAGCCTTGAGGTTTCTGAACAAAGCCCGAAAGGACAGCACTTGGGGCCAGCTTGCCACCTGTTACATGGTACAGATCTGTCTGAACCCTGACAACGAGATTGTCGGTGGAGAGGCTTTTGAGAGTCTGGTGGGTGACAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034089:ENSRNOT00000043831:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF145591=TPR_19=PD(59.6=66.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGTACTGAATAAACTGATCGACCT
R:
CTGTCACCCACCAGACTCTCA
Band lengths:
302-625
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]