GgaINT0048254 @ galGal4
Intron Retention
Gene
ENSGALG00000010956 | TTC21B
Description
tetratricopeptide repeat domain 21B [Source:HGNC Symbol;Acc:HGNC:25660]
Coordinates
chr7:19178737-19179525:+
Coord C1 exon
chr7:19178737-19178887
Coord A exon
chr7:19178888-19179363
Coord C2 exon
chr7:19179364-19179525
Length
476 bp
Sequences
Splice sites
5' ss Seq
CTGGTACTT
5' ss Score
4.74
3' ss Seq
TAGTTTAATTAACTGTGTAGGTA
3' ss Score
3.58
Exon sequences
Seq C1 exon
ATAACTATGCCACTCTGTCACGATTAATTGATCTGTTAAGAAGAGCTGGGAAACTAGAAGAAGTCCCAAGATTTCTTTTAATGGCTGAAAAACATTCTTCTAGAGCAAAGCTCGAACCAGGCTTTCACTACTGCAAAGGACTGTATCTCTG
Seq A exon
GTACTTGCAATTAAAATAAGGTTTATATGATGTATTGCATAGTTAAGTTAATTTTCTTATCTGTTATCATTTGAAGGTGCTACTTATGGTGTGTTAAGTACTGTAGCAGTACTTTGCTGTAGTTAGCTAATGGGATTTTAGGGAAGGTTTCTTTGTCTCTACTGTAATACTTTGCAATGAACTCTTCAAAGCAAAGCTCTTTTATCTCCCATACATCTTTCATATTTTCTGTTTAGTAACAAAGGATATTCTTTCTGGTTCAGTGATGTAATATTACTACTTTGAAATTTTAGGATTTCCCAGATTTTTTTGATCTGCAAAGACACATTCCTTGCAGTAGCACACTTGCTTCTCAAAACCTGTATTATTGGTGTGTGCAAATATGTGAACTGTTTTTTAAATGCTTGGGTTTTAGGTGCTACTTGGGGCAGCCAGTTATACTTGCCCAACTTTCAGTAGTTTAATTAACTGTGTAG
Seq C2 exon
GTATACAGGTGAACCAAATGACGCACTCCGCCACTTTAATAAAGCTCGAAAGGACAATGACTGGGGACAGAATGCAGTCTACAACATGATTGAAATTTGTTTGAACCCAGATAATGAAACTATAGGTGGTGAAGTCTTTGAAAATCTGGATGCTGACATAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010956:ENSGALT00000038446:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.091
Domain overlap (PFAM):
C1:
PF145591=TPR_19=PD(57.4=60.8),PF0771912=TPR_2=PU(34.4=21.6)
A:
NA
C2:
PF0771912=TPR_2=PD(62.5=36.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTATGCCACTCTGTCACGA
R:
CCTATGTCAGCATCCAGATTTTCA
Band lengths:
311-787
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]