HsaINT0174187 @ hg38
Intron Retention
Gene
ENSG00000123607 | TTC21B
Description
tetratricopeptide repeat domain 21B [Source:HGNC Symbol;Acc:HGNC:25660]
Coordinates
chr2:165890479-165890988:-
Coord C1 exon
chr2:165890838-165890988
Coord A exon
chr2:165890641-165890837
Coord C2 exon
chr2:165890479-165890640
Length
197 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAAT
5' ss Score
4.94
3' ss Seq
TCTTTTAAACATCTAACAAGGTA
3' ss Score
4.07
Exon sequences
Seq C1 exon
ATAATTATATGACATTATCTCGTTTGATTGATCTCCTAAGAAGATGTGGAAAACTCGAGGATGTCCCAAGATTTTTCTCAATGGCTGAGAAACGTAACTCCAGAGCAAAATTGGAACCAGGATTTCAGTATTGTAAAGGACTGTATCTTTG
Seq A exon
GTAAATCTATTTACAAATAAATGCTACATGATTTTTTTTTCTCATTGTAAATCAAGTAGAATAAGCTTTTCTTTGTAGTAAAAAAAAATGTACATTTCAAAATAATTCAACAGTTTTATTTACCAGACAGATTATAAACTAATATAAATTTTGTAGTCAGTGATTGAAATAAATAATTCTTTTAAACATCTAACAAG
Seq C2 exon
GTACACTGGAGAACCAAATGATGCCCTTCGACATTTTAATAAAGCTCGGAAAGATCGTGACTGGGGCCAAAATGCCCTTTATAATATGATAGAGATCTGTTTGAATCCAGATAATGAAACTGTTGGAGGTGAAGTATTTGAAAACCTGGATGGAGACCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123607:ENST00000243344:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.267
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCCAAGATTTTTCTCAATGGC
R:
CCCAGGTCTCCATCCAGGTTT
Band lengths:
252-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains