BtaINT0154319 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016512 | TTC21B
Description
Bos taurus tetratricopeptide repeat domain 21B (TTC21B), mRNA. [Source:RefSeq mRNA;Acc:NM_001102108]
Coordinates
chr2:30503211-30503689:+
Coord C1 exon
chr2:30503211-30503361
Coord A exon
chr2:30503362-30503527
Coord C2 exon
chr2:30503528-30503689
Length
166 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAAT
5' ss Score
4.94
3' ss Seq
TTTTTTTAACATGTAACAAGGTA
3' ss Score
3.83
Exon sequences
Seq C1 exon
ATAATTATATGACGTTATCTCGTTTAATTGATTTCTTAAGAAGATGTGGAAAACTTGAAGATGTTCCACGATTTTTCTTAATGGCTGAGAAACGTAACTCCAGAGCAAAACTGGAGCCAGGATTTCAGTACTGTAAAGGATTATATCTTTG
Seq A exon
GTAAATTTGTTAGCAAATAAACTCTATATAATGTTTTTCTCATTCAATTACAAAATTTCTGCATTTTAAAGTGATAGTTTTATTTACTAAATAAATTATAAATGATTTAAAGTTTGTAGTGATTGAAATAAGTAATGCTTTTTTTTTTTTTTTAACATGTAACAAG
Seq C2 exon
GTATACTGGAGAACCAAATGATGCCCTTCGACATTTTAATAAAGCTCGGAAAGACAGTGACTGGGGCCAAAATGCCCTTTATAATATGATAGAAATCTGTTTGAATCCAGATAATGAAACTGTTGGAGGCGAAGTATTTGAAAATCTGGATGCAGATCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016512:ENSBTAT00000005682:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.109
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGAAAACTTGAAGATGTTCCAC
R:
ACTTCGCCTCCAACAGTTTCA
Band lengths:
242-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]