RnoINT0157591 @ rn6
Intron Retention
Gene
ENSRNOG00000005868 | Ttc21b
Description
tetratricopeptide repeat domain 21B [Source:RGD Symbol;Acc:1565122]
Coordinates
chr3:52302178-52302683:-
Coord C1 exon
chr3:52302533-52302683
Coord A exon
chr3:52302340-52302532
Coord C2 exon
chr3:52302178-52302339
Length
193 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
AATTTTTTTCATTCAATAAGGTA
3' ss Score
5.23
Exon sequences
Seq C1 exon
ATAATTTTATGACTTTGTCCCGTTTGATTGATCTCCTGAGAAGATGTGGGAAACTTGAGGAGGTTCCGAGATTTTTCTTGATGGCTGAGAAACACAACTCCAGAACAAAATTGGAGCCAGGATTTCAGTACTGTAAAGGATTACATTTTTG
Seq A exon
GTAAGTCTATTGACAAATAAATCCTACATTATAATGATTTTCTCCCCTCATTGTACAGAAAGTAGAAAATGCTTTTTTCATACTAAAAAAAAAAACCTGCCCTTGGAAGTGTTTTAATTATTTTGTTTATGAATCATATTATAATCTAGTATAAAATTTGTAATTAGTAATTGAATTTTTTTCATTCAATAAG
Seq C2 exon
GTATACTGGAGAACCAAATGATGCCCTTCGACATTTTAATAAAGCTCGGAAAGATAGTGACTGGGGTCAAAATGCACTTTATAATATGATAGAAATCTGCTTGAATCCAGACAATGAAACTATTGGAGGTGAAGTGTTTGAAAACCTGAATGGAGACCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005868:ENSRNOT00000007832:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.164
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCCGAGATTTTTCTTGATGGC
R:
CCCAGGTCTCCATTCAGGTTT
Band lengths:
252-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]