HsaINT0176018 @ hg19
Intron Retention
Gene
ENSG00000130985 | UBA1
Description
ubiquitin-like modifier activating enzyme 1 [Source:HGNC Symbol;Acc:12469]
Coordinates
chrX:47050199-47058318:+
Coord C1 exon
chrX:47050199-47050349
Coord A exon
chrX:47050350-47058201
Coord C2 exon
chrX:47058202-47058318
Length
7852 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
3' ss Seq
CTGACCTTTTTTTCCTCCAGATG
3' ss Score
12.39
Exon sequences
Seq C1 exon
TCCCAGACCCGGGGCTCTCCAAGGCCCCGCGCTTCCGAGCTCCGCGCAAACTCTGGCTTCTCTTGTACGACAGAGGTGGTTTGCTCTTCCGTTGCCCCGTGGCTTCAGCTCATCTTTGGCAGGAAGGCGAGGCTTCCGCCCGGCACAGGGG
Seq A exon
GTGAGCTGGAGCACCGTGCCCCCAAGCCTCTGGACAGCATTTGGAGGAGGGTGCTTCCCTAATCCCAACTTCGGGGAAACCCCTCATGGGCGTATTTGGAGCCTCCGGGCCCGGGGTGATATTTAGGGGGCGTCTGCTTTTGAGACCCTTAAGGGGTGCCGTTTGGGGACTTCGGGGTGGGATTTGGGAGTCTGTTTCGGGGAGCACCCCTCGGAGGCAGGGTTTGGGGGGCTTTGGGGAGATTCTTAGGGTCCGTGTATGGGCACCCTTGTCCGTGGAGCAGGATTTGGGTTATTCTTCAAGGGGAGAAGCAAAGCTTGAGGTTACTAAAGTCAAGGCGGGACTGGGGGAGGGCTTGTTTCAGGACGGGGTCCTGGTGACAGAACAATCGGGACCGACGTGGCATTGTGGAGGTGTCAGGCCTTTGTGACCTCTGGTTTTGTGATGAGGTCCTCCCCGCGCCTGGAGGCTCAGGACTGCGAGACTGGACACGTCGGGGGCCCAGATGTTTCTAGGGAGAGGAGCCTCCCAGCTCAGGCTAGGGAAGGGACACCGGAGCCCAGCTCTTCCTGAGCTGACGAGGCGCCACCCGGCCTTTATTCATTATTCATAATAAGGTGGGGCTGTGGTAGGCGGCAGTTTTTTTGCCTCTTTCGCACCTGGTCCGCTGAAGGTTCTCGGCTTGTGAATTATTCACGAGGGGCGGATCAGCGTGCCGAAGGGACGTGCTGAAGGGGCGTTCTGAAGTCTGCCGCGCAAACGAGTTCATTGATGATTCGCAAAAGTTAAGTAGCACCCTGAGTTTTCAGTGGCTTTTCTAGGGGTTCCGTGCTTAATTCATGAGGAGCGTGGCTTTTGCAGCTTTGTCTGCGTGATCCGCGGTTAGCTTTCCCTTGCAGGTACCAGAGTTAAAACCTGGCGTCTAGCAAAGGGATGAGGCCTCCTACATTGTTCATTTCTTATGGCCTGGTAATCCCAGATAATCAGCCGGCTCTGGATTCAAATCCCATCGATCCTTTCCAGTTGTGTGATCTTTGGCAAATCGTTTTGTAAGCCTGAATAATGGGTATGAGGATAACGATAAGATTAGCTTACACTCGTTTAGCTACTTAGCGCATTTAATCTTCACGACAATCCTAGGAGGTAGGTCATTATTACCCCCACTTTATAGATAAGGAAACTGGGACACAGGAAGGCTAAGTAATTTGCCTAAGGTCACACAATCAGTGAGTGGCTGGGCCGGGATTCAAATTGGGGTCTAGTTCCGCAATCTGTAGTCTTAACCAGATGCCATAATGTCTCCCCTCCCCATTCCCCTGCGCCGCCATTTGATAGTACTACTACTACTAATATAACACTTAGCATGTGCCAGGCACTGGTCTAAGCCCTTTCTACTTATTTCTTCATTTAAACTCCATCGCAAGGTAAGTTGCTGTTATTCCTATTTTATGGATGGGGAAGCAGTGGCCCAAGTTGGGGGTTTCTCTAGTGGCTGAGTATTCATAACTAATTTTATATTAATGTAAATATATATTTACATATCTTAACATATTACTTTTATATTAATATATAATATTTTAAAAATTTAACAGTGCCTTGTGCCAGCAATGTTCTAAGGCTCATCCCATAATTTATATTCTCTGATTTTCTTTTGTTTGAGACGGAGTTTCTCTCTTGTCGCCCAAGCTGGAGTGCAATGGCGCGATCTCGGCTGACTGCAACCTCTGCTTCCCGAGTTCAAGCGATTCTCCTGCCTCAGCCTCCCCAGTAGCTGGGATTACAGGCGCCCGCCAACATGCCCAGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATCTTGGCCAGGCTGGTCTCCAATTCCTGACCTCAGGTGATCCACCCGCCTCGGCCTCCTAAAGTGCTGGGATTACAGGCGTCATCTGATTTTCATAATAACACATTACTATCCTCATTTTACAGTTGTGGAAACTGAGGCACCTGCCAAAGACATGTAGTGAGTTTGGGTTTGATTGGACCAAGGCAGCCCTTGTTCCTGAGGCGGGGAGAATGGAGGGAGGCGTGGAGAGGGGAGGTGGGGGCAGGGAGTACACGTCCCCTGGGTTTTCTGGTGGCACTGCAGTGACATCTTTCATTATTCATGAACAGGAAGGCGTGCTCACTTTGCCTTGGCTATAGCATCGTAATCCCTATTTGCTGGGCAGGGCAGTCTTGGGTGTTTCTTCGCCTTATGCATAATTCATAAATTGGGTGGAACCTTTCTTGACCTCTCTGAGTTTCCAGGTTGAGCTACTGCAGCAGCATAATTCATTATTCAGGACCTGGGAGAGTGTGTTTTCCCTGCAGCAGCCCCATTTCCCTGCTTACAGTGTATTAGATGCAGCAATAGGCGGGCGTGCCCCTTTTATTCCAACCCACTGGGCCTCATGCATTATTCATGAGTAAGTTGTGGCCTGGGTCTCCTTGGCTTCCGGGCCCCTGCAAGATCATCATTATTCATGAATGGGGGTGTGTGGCTTCCATGTTTTAACATCTGCTTTCTGGTTGCTGGTTGTTAGTCTACCAACCACTCAACTTCATGCATAACTTATAATCAGGAAGCATGGCCTTAACGGTTTTTCTTCGCTTCCTTGACAGCCTGGCTGCAACAATTCATTCATTAGTCGCATTCCATGAGGCGTGGCCTCTGTTTTACCTGTTTTCGTTGTTACTGCCACAATGTCCACCAGGTGGTGCTGTTCCACTTCTAACCGAATGAATCGCAACCGAGTAGGGAACTTTATGCATGATTCATAAGTAGGCGCGGCCCGCTTGCATCCGGGTTTCTGGGGGTGGGGCCCAAGGTTTTGTTCCGGCCCCAGGCTCAGCGTCCGCCATCTTGTGTCGGCGGCTCGGCTGTAAGGAGGTGGCAGGGACAACCACAACCACAACGGCCGGGGGAGGAGAAGGCGGCAGCGGCGATTCTAGGCGGCCCAGGCGGCGGGGAGGAGGAGAAGGAGGAGGGTGGCGGCCGGGCTTGGCTTCGGCTCCTTGAGGAGTTGGCGGCGGCGCGACCCGGGGAACCGGCATTGGTAAAAAAACGTCCTTTCACTGCGCCTCGCCCTGGGCAGGGGTTTCGGGGAGGCACTGGAGGGCCCTGAGCCACGCTGCTGTCGGGGCGGGCCGCGGTGACTCGGGAGCCAGGAATCAGCGGAGTAGGGAGGGGGAGCGGATCCTGGGGCGGGGCCGACTTTCCCCGGCCAGGACCACTCCGGCTCCCTCTGGTTGCAAAATCTGACCTTGGAGTCGGACCCCCAGGATGTGCTTTTAGAGACTCACGCCCAACATCTCTAGTCTGGGACCTGACTCCGTCCCGAACCTTGTATCTCAGATCAGAACTCTTCCCCAGTCTCCAATAGAGATTTACGTGGATCAGCATTGCTGATCAGAGCTCCTCACCATTGAATGCCGTTAAAGACCTGCCCCAGAATCTCCTTTGAGACACTTCCTAGCTTCTCAGTATTTGTCCTCAAGGCTTCCAGGACGGGCTAGATCTCGAAGGGGTCCATAGGCCCTTTATCTCTGTAAGAGAGTCCTCTTTAGCATTTTCCTTCAGACCCCCATCCCACACACATGCTAGCCGCGCTCAGAGCTTCCAGGGGTACTAGACCCTGTGAAAGGCCATTTGGGCCTGGCCTTTGTGTCGGGGGCCCCTCTTCGCCACACGTCAGGTCTCCTAACCCCACCCTGGCCCTAGCATCTTCCATCAGAGACTCTGCCCAGTATTTCTACTCAGAGACCCCTCTTACCATCTGCCTTGAGAGACTCTTCAATTCCTAGACTCTGTCCTTTGACACTTTCTCTACTTTTATGGAATTTCTCGCTTTTTATACTTCCAGTATTCAGAGACTACTGAGAGGCCTCAGCATCTTCCCCATCAGGCACCTTGAACCCCCAGAGCCTTCCAGTGCACCAGATACCAGGGAGGAACTGTTTGGATACATAATCCTCCATCAAAGAGCCCCTGCGAGCATCTGCTCTTGCAGATCCCGTTGGCTTCTAGCCCCTTCCATCAGAGACTCGCCTCCCCAACCCCACCCTAGACCCAGCCTCTGCCTTCAAAAACCAACCTGGGTTCTAGCTGCTTTTTTCACAGATCCCTTATCCTCACATCAGGCCTCAGAATCTGCCCTCAGATCGTTTCAAGGTCCCTAACGTCTGCAGTCAGGGGTTTTCAGCTTCTGCTTTCAGCCTCCTTGGACCCCAGGATCATTGTCAGATGTCCCTTCCCCCCACAGGCCTTCTTGTTTTCTTTTTCTTTTTCTTTTTTCCGAGACAGAATTGTTTCACTATGTCGTCCAGGCTGGAGTGCAGTGGCGCCATCTCAGCTCACTGCAACCTCCACCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCATGCACCACCACGCCTGGCTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATATTGCCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTGCAGGCGTGAGCCACCGCGCCTGGCCATGGCCCTCTTGTTTTCTACTGCAGTAGAAAACCCTCTTCTCAGCATCTACCTTCAGCGCCTCCATGGGGTCCTACATAATTGGTCAGAGAAACCCAACCCCATTTGGGGACCTAGCCAGTGTTTGCTTATTAACCTTTTTAAGGCCTGCACTATCTGGGCCCAGCTTCCCGTTTCCACACCCTCAGAGCAGCTGTGATACCTAGCATGTCCTGTCAGAGATTGACACAGGGCCTTTGTGTTCCATTAGAAACCTCTCCCAGCCCCTCACCATCCACCCTCACAGCCTCCTGGGACTCTGTAGTAGGAATGTCAGATACACCTCTCCTCTTGCATGTCCCTATCTATTATTTTTGGTTAAAGATTTCTCTCTGCTACCAGCATCTGTCTCCAGAGTCCTCCAGAGCCTCAACATCCTCCTGATGGAGGCTGCCTCTCCCCCCAGACCCCAACATCTTCCTGCTGCCTCCTCAGACTCTAGAATCCCCCACCCATTCCCTTTGCAGCTTCCATGGGGCCCAGCAACTGTCCTCCTACCTCCTTGCAGCCTTGGGGGCCTCCACTGCAATTTTTCAGCCTTTCTCCAAAAGATCCTTTTCCAGAGATCCGAATTTGAGTCTTTTCCTAATACCCTAGCCTAGTCCTTTCCCTCCCAGGACTTCTAACATCTCCTTTCCCATTTGTCTCAGAGCCTCCTTGCTCTTAGACACCCACTTCCTGATTCTCCTCTCACGTTCCCATGGACTTCTCAGTTAACCCCTCCCAGAAAGCTTGACATGCTCCAGCCCCCCTTCTCTATGCCCTAGCTTCTCCATCCTGCTAACCTGCCTCCTCTCACACCTCCAAGACTCCTCCCTCAAACCCTCTGGTTTGGGAATAGAGAATGCTTACGCTTGAAAATCTTCAGTTTGGAGACTCAGGTATGTTTAGAAACTAAGCCACAGCTCAGCTTTGCCAAACAGTTCACAGTGTGTATGTTATGGTGGGGGCCTGAGCAAATGTTGAGGTAGGAAGGGTGTAGATTGTTTTTCTGCTGGGGGTGGGGGATCTTTAGCTCCTCTGCAGAGTTTCTGTCCCAGACTCCTGCTTGCCTTGAGACAGGGCTGTTCCAAACCTTTGCAGTCAAAATCCACTTGAACAATCATCTGAAACTTCTTAGACTCTTGCTGCCTGCACTGGGGATCCAGAGGTGAAATGTCCAGATATTAAAGTGCTCTCTGGCCCTGGATCATCTCTAATTTATGGAGTGAGGAAATGGCATGTCCCAAACAAACTGACCAATGACAAGGCAAGGAGATAACTAAGTAATAGAGGCCACTACACGTGCCCAGGGAGGAACTCACATCCTCAGGTCAGTGAGTTCTGACCACAGACCTTGGCTTCTTTAACCCTGCCAGCAGCCCCTTGAAGACAGTTTCATTTGTCCCAGCTTTTGGAGAAAATGAGGCTCAGAGGAAATGAGATCTCTACCCCAGGTCAGTCAGAGAGTCAGTAAATGGAAAATATGGTTCACCTTTGTCTCTACTAACTCACCAAGCCTCTTGCTACCCAGGTTGGCTCTTAGCATTCTAAGCAATTCACCTGGCTATCTCAGGGGCTCCAGCCAGCCTGCTGCCTCCCCTCATCTCCCATTCCTTAGCCCTGTGGACTGGGCCCTGAGCCCAGGGGCATTTGGCAAACAGTCCCCCACCAGCTGCATGCCTCTGGGCGAGTGAATGGGGTTCTCTAAGCCTTTCTTTTCCCATTTGTGATTTGGGCATAGGGTTATCTGGGTCATGGGGATTGTTAAGATTAGACAAAGCCCTTTCCTCTTTGATTGACACACAGTATGCTCTTGGTAGATAGTAGGGAGCTCTTGTCATTGTGGTTGGTGCTAGTGACAAGTGCCAAGATGGAATCTTAGGTACATTGGGATACTTAGTGTCATAAAAGTCTCAGTGTGGGAGGACTTGTGTGAACAGAAGACTCAGTGCCTAGAGGAGCACTTGGGGTGAGGGGAAGTGACGCTGGGTCCTCCCATCTCCAGCATGTGGACCCAGTCACCCCCACCACCAGATTTCACTTCCACAGCAGGCTTTATTGTTCTGTCTCTGGGACCTAGCAGGTGACCCTGGGCAAGTTACTTCTCATTTGTCCGGCAAGGACACTAAACTCTGCCTTGCTGGGTCAGGGTCATGGAGGGGATGAAACGTGATAACACGAGGAAGCAGCCTGGGCTTCAGAGTCAGCAGATCCTGGTCTGGTCCCAGCTCAGTGTGTGGGAACCTTGGTCACCGAACGTCCCTGAGTGAATTTTTTTCCATCACTTTAAAGTTGGGGGTATTATTGATAGCAGTCCAAACCCCACAGGAGTACCCTGAGGACAGAGTGAGACGAGGTTTAGAGAAGTGCTTACTATGGCATCTGGCACAAGGAGGACTCCTGATCAATCTAATACTCATTTATCATTGTGGTTAACCTGTTTAAGGGACTCCGCATGCAGATGAGGCTTGGGATGTGTTTGTTTTCTATCTTTTTGCAACCTCTTTTATTGGTCTGTGTCGGTTTTCCCCTCCCAAAGCTGGGGGCAGGGTTGGGCTTTATAAAACTTGAGCCCCTCTGGGGACTGGGTTCTCAGCAAGTTACCGCTCCTGCCATCATGCCACCCTGATGGATGTCCAAGCCTCACTTCCCTCCTGCACTCCCCGCTCCCGCCGCCATCCCTGGGATTAAGGGAGAGGAGAATGGCTGCTTGTTACTGCCTACCTACTCTGTGCCAGGTTCTATGCTCTGTGTTATTTATCATCTCGATAACCCCGTGGGGAAGGTAAGTGGTATTATCACCCCTGTTTCACAGGTGAGAAAACTGAGGCCTGTGGCGGTTAATTATTACTGTTAGTGCGTGGCAGGCTCAAGATTTGAAACCAGGTCTGTCCTGAATCCACATCCTTCCCCTGACCTCGACACAAGTACATTCTTGTCATTCCTTTCACTCCAGGATTGGAGTCTCTCCCTCATTATGCTGGGCTGGGAAGAAGCAAATGGCTTAGTGGTCAGCAGTGTGGATTTGCAAATCAGACCACCTGGGTTCAGATCTTAGGTCTGACAGCTGTGTTACCCTGGGCAAGTCCTCACCTTTCTGTGCCTGTCCCCTCTTTGCTGTAAAATGGGGGTACTAATACTTAAGTCTTCCCTTCCCCCACAGTTGCTACTAACAAACAGAAAAACGGTACCCATGTGCTCCAGGGTCACCTCTGACCTTTTTTTCCTCCAG
Seq C2 exon
ATGTCCAGCTCGCCGCTGTCCAAGAAACGTCGCGTGTCCGGGCCTGATCCAAAGCCGGGTTCTAACTGCTCCCCTGCCCAGTCCGTGTTGTCCGAAGTGCCCTCGGTGCCAACCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130985-UBA1:NM_153280:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.978
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)