MmuINT0168790 @ mm9
Intron Retention
Gene
ENSMUSG00000001924 | Uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:MGI Symbol;Acc:MGI:98890]
Coordinates
chrX:20235547-20245691:+
Coord C1 exon
chrX:20235547-20235652
Coord A exon
chrX:20235653-20245574
Coord C2 exon
chrX:20245575-20245691
Length
9922 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
3' ss Seq
TGGCCTGTCTTTCTCCCCAGATG
3' ss Score
12.79
Exon sequences
Seq C1 exon
GCAAACTCTGGTTCTTTTTGCACGATCGAGGTGGTTTGCTCTTCCGTTGCCCTGTGGCTTCGGCTTGTCTCCAGAAGGAAGGCGAGGCTTCCGCCCAGCACTGGGG
Seq A exon
GTGAGCGGGAGCACATTTCCCCCAAGCCTCTGGACAGCATTTGGAAGAGGGTGCTTCCCTAATTCCAACTTCAGGGATCCCTAATGGGCATGTTTGGAGGTTGTGGGGCCCGGGTGGCATTCAGTGGGTGTCTACTTTTGAGGAGACACTTAGGAAGCGGTGCTTGGGGATTCGGGTGGCATTTAGGAGTCTGTTTTATGAGGTAATTCTCTGACGCAGATTTATACCCCTTGGAAGCAGGGCTTAGGGGGGACTTGGGGGAGGCTCGGGGTCTGTGTATGAGTACTCTGTTGGAGGGCAGAATTTTTGGACTCTCCAAGAGGAGAGAAGTTTGAAGTTACTTAAGTCAAGGCGGGAGTTGGGGTCTTGGGACCGGACCGAGTGACAGTGTGAATGTTCGACACCAACGTGGCACTGTGACGGTTTCAGTGGCCTTTGTGACCTCTGATGGGGTTGCGGCTGGTTTACCCGGGGCTGTGAAACCCGGACACTTCAGGGGCCCAGACCCTGGGAGAGGAGCCTCTCAACCGAGGCCAGGAAGACTGTCTGCCAGGCTCTTCTGTGCAGACATAGGGCTACCGGGCCACTGAGCGGTCCTTGGCTACTGCTTTAGTGGGACTATGGTGCGGACCTTCTTTCGTACCTGGTCCACTAGAAGAGAATTGCTCTCTAGGGGGCGGATCAGCGTGCGGAAGGGGCGTGTTGACGGGGTATCCCGAAGTCTGAGTCTCAAACTAGTTTCTTGATAACCCATACAATAATCTGTGAAGGTGAGTAGCGCCCGGTGGGTTTAAAAAAAAAAAAAAAGGCTTTTCTAAGGGTGCTATGCATAATTTATGAGGGGCGTGGTCTTTACAGTTTCTTCTTCGGGATCCGCAGTTAGCTTTCCCTCACAGGTTCCAGCATTTAAACCTGGCATCTATCAGAGAAGATGCCGCAGGTATTGTTCTTGCCTTGTCTCAGTAATTCTAGATTACTGACTCGAGACTCTGGATTCAAGACCCATCTTTGACAAGTCTTTTTGGGAGTCCGAAAAGTGGGTATGCAGGATAATAATAATTTACACCCATTTAGTTACTTTTATTAATCCATTTTATCTTCACAACTTTTCAAAAGTAGATTTCATCCTACTTCATAGATAAAGAATCTGAGATACAGGGCAGGTAAGTAATTTGTCCTAAAGCTGAACAGTGAATGGCTGAACTAGGATTCAAATTTGATCTGTTGGGTTTCAGAGTTGGATAACGTTCCCCGCCTCCAAGCCAATTTAATGGAGCCATTACTGGTGCGCGCCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTTTCTCTCTCTTTCTTTCTTTCTTCTTGGATGTATTAAAGAACATTCTTAGCAGTGATGATCTTTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCCCTCCCCTCCCCTCCCCTCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCCCTCTCCTCTCCTCTCCCCTCCCCTCTCCTCTCCCCTCCCCTCCCCTCCCCTCTCCCCTCCCCTCCCCTCTCCTCCCCTCCCCTCCCCTCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCTCCCCTCCCCTCCCCTCTCCTCCCCTCTCCCCTCCCCTCCCCTCTCCCCCTCCCCTCCCCTCCCCTCTCCCCTCCCCTCCCCTCCCCTCTCCCCTCCCCTCTCCCCTCCCCTCCCCTCCCCTCTCCCCTCCCCTCCCCTCTCCCCCTCCCCTCCCCTCCCCTCCCCTCTCCCCTCCCCTCCCCTCTCCCCTGCCCTCCCCTCTCCCCCTCCCCTCCCCTCTCCCCCTCCCCTCCCCTCTCCCCTCCCCTCCCCTCTCCCCCTCCCCTCCCCTCTCCCCTCCCCTCCCCTCTCCCCTCCCCTCTCCCCTCCCCTCCCCTCTCCCCCTCCCCTCCCCTCTCCCCTCCCCTCCCCTCTCCCCTCCCCTCCCCTCCCCTCTCCCCTCCCCTCCCCTCCCCTCCCCTCAACCCCCAGTCTGTCGCTGTTTCCTGAGGCTTGCTGAAAGAATTAGGGACCTGCCTGCCTCAGGCAGTACTGTTTGAAATTAAAAGGAGTAGTTGGTGGGACGCTTAGTGCTTAGTGAGGCAGGAGGATTTTGAATAGTTTGAAACCAGCATGGTCTCAAACCTCTCTTTCTCTCTCTTCCTCTTCTTTCCCTCTCCCTCTTCTCTCCTTCCTTTCTTCCCTGTCTGTGTGTCTACTTCTGTCTCTTTTTCCCGGGTCTGTTTTCCCCCAGACTTGCCAGGTATTAGTGATCCTTCTGTGTCAGCCTGCCAAGTACTGTGGAATTATAGGAGCTGTGCTAGCACACCCCCCAAAAACCCCATCTTTTAAGAAAATAGTGTTGCTACTGCTCAGATTAATTATATGATACAATGTGCCAGGCACTATTCTAGACCCTTTCTACATATTTACTCAGTCACAAGGTAAGTTCTTATTCTTAATCCTCATTTTCTGATCTGGGAACATTCAAGTCCTCAAATGTAAGTAATTTTGTATTAATGCAAATATGTCTACATATTGCCTTTAGTTACACATATTTGAAAATTGTAACAGTTTTGTGGCAGCACTGCTCTAAGACCCGTTCTGTACTCATTCTCATAACACATTTCATCAGTGGATTTTTTTTGAGGTGGGGATTGGTATGGTTTGTTTGTTTGTTTGTTTTTTATGATACTATGAATTGAATCCAGGGTGTTGGGGAAGTGCTTTATCCATAGTCTACATCTCCAGCTAAGTTGGATTAGTTTCATTACTATCGTTGCCTATCAAAGGCATCTAGTGAGTTTGTATTTAGCAGTATTTATCTTAAACAAGATACGCCCCTAAGTGGTCATGGATGACGAGCAAAGACTGCTCACTTGGGCTTCGCACGGTTATCCAGTATGGTGAGTGCCTTGACTATTATCTCATAATTCCCACTTGCTAGGCAGGGCCACTTTGGGTGGGGGCTGCCCATCAAACCTCATGAATAATTCGTGAACTGTATGGGATTGGTACTTTTTAAAAAGGTTTATTTATTTATTTTATGTATGTGAGTACACTGTAGCTGTACAGATGGTTGTGAGCCTTCATGTGGTTGTTGGGAATTGAATTTTTAGGATTCCTGCTCGCTCTGGTCAACTCCGCTTGCTCCAGCCCAAATATTTATTTATTATATCTAAGTACGGTGTAGCTGGCTTCAGACACACCAGAAGAGGGCGTCAGATCTCATTACAGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAGCAGTCAGTGTTCTTACCCGCTGAGTCATCTCCCCAGCCCAGTACATTTTTTTGAGACAGGGTTTCCTGTTAACCAGGCTTGCCTCAGACTAATGAACCTCCTGCTTCTACCTTCCTAGTGCAGAGATTAAAGGCATGCAGCACCATGCACATAAGCGCAGCTTGGGCGCAATCTTTCTTTTGGTGTTCCCACCCCACCACCCTAAGACAAGGTTTCTATGTGTAGCTCTGATTGTCCTGGAACTCCTTCTACAGACAGGCCTCAAACTCAGACCCTCCTGCTTCTGCCCACTGAGTGCTGGGATTAAAAGTGTACACCACCACACCTGGTGGACACAACCTTTCTTGACCTCTCTGTTTTCAAGTTGAGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTCCAACAGCTTCATTCAGTATTTAGGAGTCAGAGGAGTGCTGCCTGCAGTAGCCCTGTTTCTTGCTTACTGGGTATTAGATGGAGCAATAAGGCAGGCCTGCCTCTTTTGTTCCATCTCACTGAGTCTCGTGCATTATTCATGAATACGATATAGCTTTGGTCTCCTTGATTCCCAGCTACTGCAAGATCATTCATTATTCATGAACATGGGGTGTGGTTGTAATGCTTTAACATCTACTTTCTGGTTGCCTAGTCCTAGTAAACCCATAACCTTGCTTCGTGATTCACGATCGGGAAGAATGGCCTTGAGGTCCTTCCTTGATTTCTTTGACAGCTTAGATGCAGTAATTCTTTATTCATATTTCATAGCCTCTTGCTCTACCTGTTTTTCTAGTTACTGCCTCCAGAGCCACTTGGTGGAGCTGTTCTCCTTCTAATTAAAGAAGTCCCAAACTGGGCAGGGAAAATACATGATTCATGAGTGGGCGCGGTCCTCTTGCATCCGGGTTTCTGGGGGTGGGGCTCAGGGTTTTGTTCCGGCCTTGGGCTCTGCCGCCGCCATCTTGTGTCGGCTGCTGGGGTGAAGGAGGGTGGCAGGGAAGACCACAACCACCGCGGTCGGGGAAGGAGAAGGCGACAGTGATCCTAGCTGGCCCAGGCGGCAGGAGGAGGAGGAGAAAGAGGAGGGTGGCGGCCGAGCTTGACTTCGGCTCCTTGAGGAGTTGGCGGCGGCACGACCCGGGGAACCGGCATTGGTAATAGCTTTTCTCTGCACCTGGCTCGAAGCGCAAGGGCTCTGGGAGGTATGGGAGGGTCCCTGCTGGCTCTCTGCCAGCCCAATGTCTGAGTGCACTGCCGTGTCCTGGGTATTAAGAGTCACTAGGCAAGCGGGTGTGGGGGTGTGCAAATCCTGGGGTGGGGTGGATCACGTCTGTCTGGGACCACCCCTATTCCCTTGAGCTTCGAAATCTGACCTTGACGTCAGACCCCTATCTCAGCTTCTGGAGACTTCTGGCTCAGCACTATTACCAGGTATCTTGATCCGATCCTGAGCCATGCATTTCCTATCAGAACTCCCCACAGTCTCCATAAAGGCACCGGAATTCGGTGTCGCTGCTCATGAAAGCCGTCCATACTTGTGTGCTATTTGAAGACCTGCCCCAAAATCTCCCTTGAGACTCTTCCTAGCCCTTCAGTATTTGCTCTCATGGCTTAAGAGGGGCCAGGCTTGAGGAAAGGTCCGCGTGGCCTTCATTTCCGAATGAAGAGCCTTGTCTAGCATTTTCATCCAGTCTCCCCTCCCCCCAGGATACTATCTGTCCTTAGAGCTGCCATCTGGATTAAACCCGGTGAAAAGCTCTCTGCCTAGCCTTTCCGTGGGAAATCCATTCCTACATTTGAGATCTCCCAATACCACTTTGACATAGCATCCTCCATCGTGGACACCTGGCATTCTTATTCTTTTAAGCACCTGCCTTTAGAGACTCTCCCTGCTTTTAGGGACGCCCCCCTTTTTCACGTTCTCATTGTTCTTGAAGCATTGTTGTCTTCTCCATCAGCCATCGTAACCCCAGTATATTTCCTTTAGTCTCTCATGGGACTAGACGCCAGGGAGGACCTGTTTGGACACAGTTCTCCATTAGTGATCTCTTGCCGCCATCTACTCTTTCAGACTCTTGATTTGTAGCCCCATCTGCCCGATGGTCTCATTCTAGACCCAATTTTTGCCTTCAAAGGCAGACCAGCATTCTAGCTTCTCTTTTTATAGATTCCTTAATCTAACAACAGGCCTCAGAATCTGCCCTCGTCTTTTTTAAAGGTTTCTAGTACCATCATCATTCAGAGAGTCTCAGCATTTGCTTTTGACTTCCCTGAACCTCTATCACTGTCAGATACCTTTTTCCCCAACAGGCTCATTTATCTTCCACAGGAGTAGAAAACCTCATCTATTTACTGTGGAGTCACAAAATTGACTAGAGGAACCTAATTCCATTTGAAGATCTAGGCAGTATTTGCTTGGTAATATATTATCATGATTACAGAGTTTTACTGTGTGGCTTTGGCTGTCTCAAACTCTTAGAGGCCAGCCTGCCTCTGCCTCACTAGTGCTGGGATCAAAGGTATACACCACCATGCTTAATTTTTAGTAATCCTTTTAAGGCTTAAATTATCTGAAATTCATCTTCCTTTCTCTACCCTGTCAGCAGCTGTGGTACCTGTTTAGATCTACGCAAGACCTTTGTTGCTCCATTAGAAATCCCTCTCCAAGAGTCTGCTCTCAGAGACCTCTCCTTGCCTCTTCGCACTTAATATCACAGCTTCTTGGCACTATAGTGTCAGTATCAAAGACCTTTTTCTGTGCATTCCCATTATTTTTAGTGAAGGGTTTCTATCACTAGAATCGAAGACTGTCAGTCCCAGCATCTCCCTGCAGTAGTTTCAGGGTCTACATTCCCCCACCTCTTTCTAGAGACCCAGATTTAAGTCTGTCTTAATACCTCTGTCCAAGGCCGGGCGAGGTGGCACACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCCAGGCCAGCCTGATCTACAGAGTGAGTTCCAGGACAACCAGGGCTACACAGAGGAACCCTGTCTCAAAAAACCAAAAAATAAAAAAAAAAACAATACCTCTGTCCAATACCCCCACCATTTATAAGGCCTGCTAAGGTCTCATTTGGGTGTCTTTTATTATCTCCTTCACAGCTCCTTGAGCTCAGTGACTTCCTCTGATGCCTTTCTCATACTCCTCAAGACTTCTCCTTTAAAACCTCCCAGAAACCTTGGCGAGCCTTAGCATCCTCCTCTGTACAATATCTTTTCTACCTCAATCAGCTGGCTCTGCTTCCTAATCCTACCCCAGGTTCCCCTGCTCAGCCTTTCTCTGCTTTGGGAATAGAGTATTCTCAGGCTTCAGTCATCAGTTTGGAGACCCGGGGTAAGTTTAAAATGCTTTCATTTCAGCTTAGCCAAGTAAGTTTTGGAAAATATATCCTACACTTGATCTTAAGCACTGGGAAATATATTCTAATAGAGAAGGCCGAGCACATGGTGAGGGAGAAAGGATCTCCATTGGCTTTGCTTTTTTGTATTTTGTTTTTATGGATTTATTTTTGGATGGGAGTAAGGGAATCTTTAGTTCTTGTCCTAGAGTCTCTGCCCCACATTCTTCCTGCTTGCCTTGATAAAGGGGCTTTCCAAAACCTGGCAATTGAAATCTCCTGTTTAAATATTTTTTGAAATAGTCTCACTGTACAGTTCAGGCTGACCTCAAACTTAAGAGTCCTCCTGCCTCTGCTTCCTTTTTTTTTTTTTAAGATTTATTTATTTAGGAAGCAGAGGCAGGTGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTTTCGAAAAACAAACAAAAAAAAATTTATTCATTTATTTTATGTATGTGAGTACACTGTAACTGCATAGATGGTAGTGAGCCGCCTTCTTTTTTATTTATTCATTTATCTACTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGAGCATCAGATTGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTTGCAAGAGCAGTCGGTGCTCTTAATCACTGAGCCATCTCACCCCAGTTATGAGCCTTCATGTGGTTGTTGGGAATTGAATTTTTAGGACTTCTACTTGTGGTCCTGCTTGCTCCGGTCAACTCTGTTCGCTCAGTCCCTGCTTCTCTGGTCCAAAGATTTATTTATTATTATAAATAAGTACACTGTAGCTAACCAGATGCACCAGAAGACGTGTCAGATCTCATTACAGGTAGTTGTGCCACCATGTGGTTGCTGGGATTTGAACTCACTACCTCTAGAAGAGCAGTCAGTGCTCTTAAAGGCTGAGCCATCTTGCCAGCCCCTGCCTCTGCTTCCTAAGTGTTGCGGTTGTGGGCCTGTACTGCCACACCTGGCTTCAAAGTCCACTTTTGAACAGTGACCCCAAACCTGCCAACTTAGACCCTTGCTGCCAGCACTGGGTGAGGGTAGAGAGGTAAAGGTCTGATAAAGAGCTCTCTGGCTCTGGATCTTGTCTGATGTAGGGAGTGGAGAAAGAATATGCCTGGAACAAATGGCAAGGGAAAGGAGATAACTTAAGAAATGGAGGCCCCTGTGAGTGCCTTGGGAGGAGCCTCTGTCCTCATGTCCTTGAGTTTTGACCACAGATAGCCTCTTTAGCCTCATCATGAGGTCAGTTCATTTTCTCCCAGCTTTTGGAGCAAATGAAGAAATAGGATCTCCATGCCAAGTCACTGCCAATAAGTGCAAAATAGGAATTACTTTTGACTCTCTCCTAGGTTATCAATTCTCTTCCTACCCAAGTTGGATCTAAGTATTCCCAGCAACTGCACTGGCAAAATTTGACCCTGGGCAGGCTCCTACTTCCCCTCTTCTCCCTTGCATTATCTCCTATCTCTGAGTAGTCTGGGCTGGACCCAAAGCCAAATTCTGACACTACTCACCTAAGAAAACCATACAAACTAGACAAATGCCATGAGCCAGGAGAAGTGAGAGAAGTTCTCCAAGCTTTCACTTTCTATTTATGGTAAGAGAATGGGCTTATGTAGTTCACAGGGCATTAAGACAAAGCCCTTTACTCTTGTGACAAATGGGGTAGATAGTAGAGAGCTCTTGTCATTGTGTTCATATTAGAATGTGACAGTGCCAAGATGGAATCTTAGGTATGTTGGTGGTCTTAAGGGTCAGAAGAGGCTTCATTGTAAGAGCAGTTGTGTGAACAGAAAACTCAGGGTATATCCAAAGTGCTTTGAAGAGCCACTGGGCCTACAAAGTGATTGTAGGTCCTATCTTTTATTTATTTCTGACTCCACCACCATTAGAGTTCACTTCCAGTAGCAGGCTGTATTGTTATCTTCCCCACCTCTGGGATCTAGTATGTCACTTGATCATATGAGCTCAGGTTTTCTCATTTGTTCAACAGGGATCTTAAGCCCTGCCTTGCAGGGTCAAGACAATTGAGAGCATGAAATTTGCTAACTCTGAGAAGTAGCTTGGACTTCAGTGTCATTGGATCTGGTCTGATCCCAGTTCAACCACTCTGAGTGGGAACTTTGTTCAAATCACCAAACATCCCTGAAGTTTTTCCTTCCATGTGAGCTGGGGTAAATAAGTAGTTCGATTCCCATAGGGCTGCCCTGAGGATAGACAGCGACAAGACTAGTAAAGCGTTTAATGTGGCCTCTGACACAGAACTCCTAGTAAATATTCATTTATCATAACTGCTAACCTGTTGAAGGGCCTTCACATGAAGAGACTTTAGAAGTGTGTATTTTCTCTCTTACGCAGCCTGTTTTATTGGCCCAGGTTGTTTTCTATTCCTAAAACTGGGAGAAAGGTTTGGGCTTTGTAAAGCTCTGCCCTGAGCCCTCCTGGACCTGTGGTCTGTATCTTTTCTCATCACAGCAACCCATAGAGCTATATCACCACCTATTTTTGCAAAGTGAGGGAGCAGCTCTACATGCTACCTATCAGGGACAAGATTGGAAACCTGAGTATTTCCTGAGTACACATCTGTCCTCCAGTCTTCTCAAAATGGTCGTCTTCCTTTTACTCCATAGCATTGGCGCCTTTCCCTTATGCTGGGCTAGGGAAAGACAGGATGACTTAGCAGTCAGCTGTGTGGATATGCAGGCCAAACCACCTTGGTTCAACTCTTGAGTCTGACAATGGTGTGATCCTGGACAGGCCACGTCATCTGTCCGTGCTAGTTTCTTTCCTAATGTAGACTTGCTGATCCTTGATCAAATCTTCTCCCACTATTACTATTAATAAGTAGAAAAGTAGTTTAAGGCTAATCAAGGCTACATGGTGAGACCCTGTATTTAAAAGAAACAAATAAACCAGAAAAATATCACCATGTATCCTAGGCTTACCTCTGGCCTGTCTTTCTCCCCAG
Seq C2 exon
ATGTCCAGCTCGCCGCTGTCCAAGAAACGTCGCGTGTCCGGGCCTGATCCAAAGCCGGGTTCTAACTGCTCCCCTGCACAGTCTGCGCTGTCCGAAGTGTCCTCAGTGCCAACCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001924-Uba1:NM_009457:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: